Non-Coding RNA Search

Ss1.1-rton1240b_g16.5

Sequence:


               
               CTTAAGGGACCAGGCCTAATCACATCGGGGACTCGAGGCCTCCCTTCCAGGCTTGGCAGG
CAGAGTATCTCAAGATGAAGAGAAAGACATTTTCCCTTGCATGCTGGCCGCTGTTTCATC
TTCTACTACTCTTAGGAAACGCTGTAACTTCTAATGCTAACACTACAGCCACCACCCTTG
GACAAACCACATCACCCAGGGGAACTAACACAACAGCTATAACCTCCAGTGGGAACATCA
CGACCACCTCCCTCGGACCAACCACACCGTCCAGGGGAACTAACACAACAGCTATAACCT
CCAGTGGGAACATCACGACCACCTCCCTCGGACCAACCACACCGTCCAGGGAAACTAACA
CAACGGCTATAACCTCCAGTGACACCAGCACAAGTACTGCCCCTCCAAGGAAAGAGGAGA
ACCTTAGCGGACAACTGACACCATGGGAAGTTGTTCTGGTCACTCTGGCCTCGGTTGCAA
TGGCTGTGATTCTCGTCACCGGGCTTCTCTTCCATTTCAGAAACTCTCCAGGCCTCAGAA
ACCTCTTCGATGTTAATCTCTTACCAACTGCATGGCCAAGCCCCTACGGGACCAGGGCAA
CTGCAACTGACTTCAGAGGAGACCCTTCTCCCGTAGTCATGGAGCTGACTGGGAGGCGGG
AATAGCACTGAGCTCCCTGAAGGCAGACGCATCACCAATGTGTGGGGGTGGGGGGCTGAC
CTGGGGGAGCCTGAGTATTCCTCCTGTCCGAAGGACTGTCCCTCCCAGCTCCATTTCAGC
CTCTGACTGTCCTCCTTCCCACTTGGTTTTTCCAGACCAAAACAAGGAGGCTGTAGCTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTAAGGGACCAGGCCTAATCACATCGGGGACTCGAGGCCTCCCTTCCAGGCTTGGCAGG
CAGAGTATCTCAAGATGAAGAGAAAGACATTTTCCCTTGCATGCTGGCCGCTGTTTCATC
TTCTACTACTCTTAGGAAACGCTGTAACTTCTAATGCTAACACTACAGCCACCACCCTTG
GACAAACCACATCACCCAGGGGAACTAACACAACAGCTATAACCTCCAGTGGGAACATCA
CGACCACCTCCCTCGGACCAACCACACCGTCCAGGGGAACTAACACAACAGCTATAACCT
CCAGTGGGAACATCACGACCACCTCCCTCGGACCAACCACACCGTCCAGGGAAACTAACA
CAACGGCTATAACCTCCAGTGACACCAGCACAAGTACTGCCCCTCCAAGGAAAGAGGAGA
ACCTTAGCGGACAACTGACACCATGGGAAGTTGTTCTGGTCACTCTGGCCTCGGTTGCAA
TGGCTGTGATTCTCGTCACCGGGCTTCTCTTCCATTTCAGAAACTCTCCAGGCCTCAGAA
ACCTCTTCGATGTTAATCTCTTACCAACTGCATGGCCAAGCCCCTACGGGACCAGGGCAA
CTGCAACTGACTTCAGAGGAGACCCTTCTCCCGTAGTCATGGAGCTGACTGGGAGGCGGG
AATAGCACTGAGCTCCCTGAAGGCAGACGCATCACCAATGTGTGGGGGTGGGGGGCTGAC
CTGGGGGAGCCTGAGTATTCCTCCTGTCCGAAGGACTGTCCCTCCCAGCTCCATTTCAGC
CTCTGACTGTCCTCCTTCCCACTTGGTTTTTCCAGACCAAAACAAGGAGGCTGTAGCTGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               421-518, - strand, RNAz p=0.720429

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               421-518, - strand, RNAz p=0.720429

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               12-144, gnl|bosTau2|chr23 (20600239-20600105)
               

               
               12-144, gnl|Hg17|chr6 (31118801-31118937)
               


               
               290-518, gnl|bosTau2|chr23 (20598286-20598058)
               

               
               290-518, gnl|Hg17|chr6 (31120762-31121211)
               

               
               290-518, gnl|Mm7|chr17 (33705550-33705260)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-144, gnl|bosTau2|chr23 (20600239-20600105)
               

               
               12-144, gnl|Hg17|chr6 (31118801-31118937)
               


               
               290-518, gnl|bosTau2|chr23 (20598286-20598058)
               

               
               290-518, gnl|Hg17|chr6 (31120762-31121211)
               

               
               290-518, gnl|Mm7|chr17 (33705550-33705260)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ton (1.404)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (1.404)

	12-144, gnl\|bosTau2\|chr23 (20600239-20600105)
	12-144, gnl\|Hg17\|chr6 (31118801-31118937)

	290-518, gnl\|bosTau2\|chr23 (20598286-20598058)
	290-518, gnl\|Hg17\|chr6 (31120762-31121211)
	290-518, gnl\|Mm7\|chr17 (33705550-33705260)