Non-Coding RNA Search

Ss1.1-rtra01_p12.5

Sequence:


               
               AATTTGAAGAGGAGGAAGATGATGATGAATATGACTCTGAAATGGAAGACTTTATTGAAG
ATGAAGGAGAACCTCAGGAAGAAATATCCAGGCACATTCGAGAAATCTTTGGCTATGACC
GAAAAAAATACAAAGATGAAAGTGATTATGCCTTACGTTACATGGAGAGTAGTTGGAAAG
AGCAGCAGAAAGAAGAAGCAAAGAGTTTAAGACTAGGCATGCAAGAAGATTTAGAGGAAA
TGAGACGTGAAGAAGAAGAAATGAGACGTCGAAAGGCCAAGAAGCTGAAGAAGCGTTAGC
TGTGGCTTTTATTTATGTTTGTGAATTCTGGAGACAGTCTGCCACAAGGAAGTCCTGCTT
TCAGACTGAAGAAGCCCCTTATCATTTTAAATACTCAAGGAAAAGGAATGCATACTGTCA
TCTATCTGCAGGCTGTCATTTGAGCGAAAGTATTTTCATATACTTTCCAGGGTGCAATCT
GTAATGCAGATGATATAACGCCCAGTGAGTGCTCTTACGAAGCTCACTGTTCACAGGTGC
CAGCCCTGATCCTGCTGAGCTATGCACTCTAATGTGGGGCCGCTCACAAGTCAGCCAATC
TCATATTATTCCTTTGCTACTCTAAAAAGGAAGAAAAGGATTGCCTGTTTACTTCCATAA
TTCTGCTGATGTGTGAGTACGGCACTGCCTGGCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTTGAAGAGGAGGAAGATGATGATGAATATGACTCTGAAATGGAAGACTTTATTGAAG
ATGAAGGAGAACCTCAGGAAGAAATATCCAGGCACATTCGAGAAATCTTTGGCTATGACC
GAAAAAAATACAAAGATGAAAGTGATTATGCCTTACGTTACATGGAGAGTAGTTGGAAAG
AGCAGCAGAAAGAAGAAGCAAAGAGTTTAAGACTAGGCATGCAAGAAGATTTAGAGGAAA
TGAGACGTGAAGAAGAAGAAATGAGACGTCGAAAGGCCAAGAAGCTGAAGAAGCGTTAGC
TGTGGCTTTTATTTATGTTTGTGAATTCTGGAGACAGTCTGCCACAAGGAAGTCCTGCTT
TCAGACTGAAGAAGCCCCTTATCATTTTAAATACTCAAGGAAAAGGAATGCATACTGTCA
TCTATCTGCAGGCTGTCATTTGAGCGAAAGTATTTTCATATACTTTCCAGGGTGCAATCT
GTAATGCAGATGATATAACGCCCAGTGAGTGCTCTTACGAAGCTCACTGTTCACAGGTGC
CAGCCCTGATCCTGCTGAGCTATGCACTCTAATGTGGGGCCGCTCACAAGTCAGCCAATC
TCATATTATTCCTTTGCTACTCTAAAAAGGAAGAAAAGGATTGCCTGTTTACTTCCATAA
TTCTGCTGATGTGTGAGTACGGCACTGCCTGGCTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8N3E7_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8N3E7_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               429-547, - strand, RNAz p=0.99619
               

               
               583-696, + strand, RNAz p=0.995261

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               429-547, - strand, RNAz p=0.99619
               

               
               583-696, + strand, RNAz p=0.995261

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AF452716, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AF452716, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-130, gnl|bosTau2|chr29 (18222515-18222647)
               

               
               1-130, gnl|Hg17|chr11 (18590566-18590434)
               

               
               1-130, gnl|Mm7|chr7 (43172321-43172195)
               


               
               204-696, gnl|bosTau2|chr29 (18224829-18225327)
               

               
               204-696, gnl|Hg17|chr11 (18588079-18587579)
               

               
               204-696, gnl|Mm7|chr7 (43169569-43169114)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-130, gnl|bosTau2|chr29 (18222515-18222647)
               

               
               1-130, gnl|Hg17|chr11 (18590566-18590434)
               

               
               1-130, gnl|Mm7|chr7 (43172321-43172195)
               


               
               204-696, gnl|bosTau2|chr29 (18224829-18225327)
               

               
               204-696, gnl|Hg17|chr11 (18588079-18587579)
               

               
               204-696, gnl|Mm7|chr7 (43169569-43169114)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               tra (0.123092)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               tra (0.123092)

	429-547, - strand, RNAz p=0.99619
	583-696, + strand, RNAz p=0.995261

	1-130, gnl\|bosTau2\|chr29 (18222515-18222647)
	1-130, gnl\|Hg17\|chr11 (18590566-18590434)
	1-130, gnl\|Mm7\|chr7 (43172321-43172195)

	204-696, gnl\|bosTau2\|chr29 (18224829-18225327)
	204-696, gnl\|Hg17\|chr11 (18588079-18587579)
	204-696, gnl\|Mm7\|chr7 (43169569-43169114)