Non-Coding RNA Search

Ss1.1-rtra02_e15.5

Sequence:


               
               AGAAGAAGCCATTAAGACTGTTTACTGTGAAAATAAATGTGGAAACTGCTCTCTCAAGGT
ATTTTTCTTAATTATTTTGGCTGGGAGTAAAGAGGAAATCTTTTAAGAGCTATCTAAGTT
AGTGCTTCATGACTAGTTAGCTAACCAGTGTTTCTCTTGGTGTACTAAAAGCTACCCAAG
ATAAGAGTAGTTTTGTTATTGTTATTCGTAATTACTGATAACAGTAATTTTTATAACAAC
ACATACTTCCTGTTATGTAACATGTACTTTAAAACATCTTTTCAAGATCCATATTGTTGC
ATTTATCTAGAATGAGTTTAGAAAACAAAAATCAATGTAGATTACATATCTCAGTTACCA
CCAAATGATGTTGCATGAGTGTGAGGACTTAAAGAATTCAGCTGATGTAGGAGTTCCCAT
CATGGCTCAGTGGTTAAAGAACCTGACTAGTATCCATGAGGAGGCAGGTGCGATCCCTGG
CCTTGCTCAGTGGGTTAAGGATCCAGCATTGCTGTGAGCTGTGGTGTAGGTTGAAGACAC
AGCTCGGATCCCATGTTGCTGTGGCTGTGGTATGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAGAAGCCATTAAGACTGTTTACTGTGAAAATAAATGTGGAAACTGCTCTCTCAAGGT
ATTTTTCTTAATTATTTTGGCTGGGAGTAAAGAGGAAATCTTTTAAGAGCTATCTAAGTT
AGTGCTTCATGACTAGTTAGCTAACCAGTGTTTCTCTTGGTGTACTAAAAGCTACCCAAG
ATAAGAGTAGTTTTGTTATTGTTATTCGTAATTACTGATAACAGTAATTTTTATAACAAC
ACATACTTCCTGTTATGTAACATGTACTTTAAAACATCTTTTCAAGATCCATATTGTTGC
ATTTATCTAGAATGAGTTTAGAAAACAAAAATCAATGTAGATTACATATCTCAGTTACCA
CCAAATGATGTTGCATGAGTGTGAGGACTTAAAGAATTCAGCTGATGTAGGAGTTCCCAT
CATGGCTCAGTGGTTAAAGAACCTGACTAGTATCCATGAGGAGGCAGGTGCGATCCCTGG
CCTTGCTCAGTGGGTTAAGGATCCAGCATTGCTGTGAGCTGTGGTGTAGGTTGAAGACAC
AGCTCGGATCCCATGTTGCTGTGGCTGTGGTATGGG

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-170, gnl|bosTau2|chr20 (18193842-18194007)
               

               
               1-170, gnl|Hg17|chr5 (42840572-42840410)
               

               
               1-170, gnl|Mm7|chr15 (3103080-3103229)
               


               
               203-402, gnl|bosTau2|chr20 (18194000-18194195)
               

               
               203-402, gnl|Hg17|chr5 (42840417-42839898)
               

               
               203-402, gnl|Mm7|chr15 (3103225-3103640)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-170, gnl|bosTau2|chr20 (18193842-18194007)
               

               
               1-170, gnl|Hg17|chr5 (42840572-42840410)
               

               
               1-170, gnl|Mm7|chr15 (3103080-3103229)
               


               
               203-402, gnl|bosTau2|chr20 (18194000-18194195)
               

               
               203-402, gnl|Hg17|chr5 (42840417-42839898)
               

               
               203-402, gnl|Mm7|chr15 (3103225-3103640)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               nje (0.16592)
               

               
               tra (0.123092)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)
               

               
               tra (0.123092)

	1-170, gnl\|bosTau2\|chr20 (18193842-18194007)
	1-170, gnl\|Hg17\|chr5 (42840572-42840410)
	1-170, gnl\|Mm7\|chr15 (3103080-3103229)

	203-402, gnl\|bosTau2\|chr20 (18194000-18194195)
	203-402, gnl\|Hg17\|chr5 (42840417-42839898)
	203-402, gnl\|Mm7\|chr15 (3103225-3103640)