Non-Coding RNA Search

Ss1.1-rtra02_i12.5

Sequence:


               
               AAATCTACCTTATTAGTGTTACCAAGTTATGATGTGCCATGGGAATAAAAAATGTATTTG
ATAACTTAATATTCTCATTGAATCATGAGAGAATGTGTATTTGTAGGTAGTACTCTAAGT
AAACCTCATGTTGATATGTTATTAAAAGAGACAGTGATAAAAGTTTAATCATGATCATTA
CACTTACTTGCCTTTTTTGGTCCAATGACCAGTAGGTATATATGGTAGGGGTTTCTTACT
AAACTTTTTTCTTTGGTTTTTATGTAACCTGTTTTACCTTTAGCGAACTATGTTGCTAAA
TGGCTACACTTATCTGCAACTTTCTTGATTTTCAGTATCTTTGTCACTGATCACGTATTT
GTAAATAAGCCTGATAAAATGTTTCCTATAAGTGGTTTGTATTAGTATATTAGTGTCAAA
TCAGAATTGAAATTTAAACACTATACATGTGTATGTATAGACGGCATCATCAGCTTATGT
AGAACTGATGGCCTTACTTTACAATCTTGTTTTACCCAAAATTAAGCTATTGGGTTTGAA
AGCTAAAAGGAGCACTTTTGTAGACTAGCAGCTTTCCTTCTCCTCTTCTTTGATTGTATG
GTGGGTGACCTATTTTTACAAATTACACTTCCTGTTGATTAGTAAAATTAGTGTCAAGTA
ATAACCTGCTTCTACCTGTCTTTCTTGTGACCCTTTCGAGGGCAGGTGTTTAAGCCTGGT
GTTTATGATGCAGTGTAGAAGTGGTGAGCAGTAACTGACAGTATTGTGGTGCTTGCTGGA
CGTGTCTGATCTTTTGAAACAGATTTTTAGTAAGCATTTTCCAGATGTAAAACTAGGTTC
GGATCCTAATTTTATTCCTGGGGCAAAATAGACAGGGATGATCTCCTTGAATCTCTTCTC
AAATTAATAATTTTATCTTTGGTGTTTCTACCCTTTAAGGCCACTTGGTGCAATTTAGAA
AGTATTGGCTTCTCTTCCCCCTCGTCACAGTCAAAATTAACTTCTAAAACCTCAGGAACA
GTATAGAGAATCGAAACCCTCAATACGGCAGCACGCTTAGCTGTAGTATGTATTAGGGTA
CAGCTAGATCAGGTATTCCTGGTGGTCTTTTGCACTTTAATTTCTGTTATTTTGAGACTT
AAGAGGATGAGGAAGAGATCTCCTGATTAACACTTGGGGAAGGAATATCTGCGTTATTCT
GTTTCTTTTCTCACCAGTTTACCTCTGCAGACATCTTCCTGTGCAGATCACTACTTCACA
GTTGCCAAATGTTAAAATATTTGACTTCTGAAATTCGCTATCAGCAAAGTTATGTACATT
GTTCTGTTTCTAATTAACCTTAGCAAATGTACATAATGTCATAATCTGATAGTATTTGAC
AGTACTTATGTATACAATGTTTCATAAGCATTTTTAATAAGATTTGTATTTTTAAATTTA
GTATATAATAAAAAGATGTGTCTGAGTGTCATTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATCTACCTTATTAGTGTTACCAAGTTATGATGTGCCATGGGAATAAAAAATGTATTTG
ATAACTTAATATTCTCATTGAATCATGAGAGAATGTGTATTTGTAGGTAGTACTCTAAGT
AAACCTCATGTTGATATGTTATTAAAAGAGACAGTGATAAAAGTTTAATCATGATCATTA
CACTTACTTGCCTTTTTTGGTCCAATGACCAGTAGGTATATATGGTAGGGGTTTCTTACT
AAACTTTTTTCTTTGGTTTTTATGTAACCTGTTTTACCTTTAGCGAACTATGTTGCTAAA
TGGCTACACTTATCTGCAACTTTCTTGATTTTCAGTATCTTTGTCACTGATCACGTATTT
GTAAATAAGCCTGATAAAATGTTTCCTATAAGTGGTTTGTATTAGTATATTAGTGTCAAA
TCAGAATTGAAATTTAAACACTATACATGTGTATGTATAGACGGCATCATCAGCTTATGT
AGAACTGATGGCCTTACTTTACAATCTTGTTTTACCCAAAATTAAGCTATTGGGTTTGAA
AGCTAAAAGGAGCACTTTTGTAGACTAGCAGCTTTCCTTCTCCTCTTCTTTGATTGTATG
GTGGGTGACCTATTTTTACAAATTACACTTCCTGTTGATTAGTAAAATTAGTGTCAAGTA
ATAACCTGCTTCTACCTGTCTTTCTTGTGACCCTTTCGAGGGCAGGTGTTTAAGCCTGGT
GTTTATGATGCAGTGTAGAAGTGGTGAGCAGTAACTGACAGTATTGTGGTGCTTGCTGGA
CGTGTCTGATCTTTTGAAACAGATTTTTAGTAAGCATTTTCCAGATGTAAAACTAGGTTC
GGATCCTAATTTTATTCCTGGGGCAAAATAGACAGGGATGATCTCCTTGAATCTCTTCTC
AAATTAATAATTTTATCTTTGGTGTTTCTACCCTTTAAGGCCACTTGGTGCAATTTAGAA
AGTATTGGCTTCTCTTCCCCCTCGTCACAGTCAAAATTAACTTCTAAAACCTCAGGAACA
GTATAGAGAATCGAAACCCTCAATACGGCAGCACGCTTAGCTGTAGTATGTATTAGGGTA
CAGCTAGATCAGGTATTCCTGGTGGTCTTTTGCACTTTAATTTCTGTTATTTTGAGACTT
AAGAGGATGAGGAAGAGATCTCCTGATTAACACTTGGGGAAGGAATATCTGCGTTATTCT
GTTTCTTTTCTCACCAGTTTACCTCTGCAGACATCTTCCTGTGCAGATCACTACTTCACA
GTTGCCAAATGTTAAAATATTTGACTTCTGAAATTCGCTATCAGCAAAGTTATGTACATT
GTTCTGTTTCTAATTAACCTTAGCAAATGTACATAATGTCATAATCTGATAGTATTTGAC
AGTACTTATGTATACAATGTTTCATAAGCATTTTTAATAAGATTTGTATTTTTAAATTTA
GTATATAATAAAAAGATGTGTCTGAGTGTCATTTGT

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               498-613, - strand, RNAz p=0.758809
               

               
               812-927, - strand, RNAz p=0.919547
               

               
               1166-1282, - strand, RNAz p=0.63568

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               498-613, - strand, RNAz p=0.758809
               

               
               812-927, - strand, RNAz p=0.919547
               

               
               1166-1282, - strand, RNAz p=0.63568

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1476, gnl|bosTau2|chr21 (30586467-30587940)
               

               
               1-1476, gnl|Hg17|chr14 (35409455-35410925)
               

               
               1-1476, gnl|Mm7|chr12 (53793811-53795252)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1476, gnl|bosTau2|chr21 (30586467-30587940)
               

               
               1-1476, gnl|Hg17|chr14 (35409455-35410925)
               

               
               1-1476, gnl|Mm7|chr12 (53793811-53795252)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               pgl (0.236967)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               mgm (0.180343)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               lyg (0.133103)
               

               
               tra (0.123092)
               

               
               cty (0.10408)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.236967)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               mgm (0.180343)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               lyg (0.133103)
               

               
               tra (0.123092)
               

               
               cty (0.10408)

	498-613, - strand, RNAz p=0.758809
	812-927, - strand, RNAz p=0.919547
	1166-1282, - strand, RNAz p=0.63568

	1-1476, gnl\|bosTau2\|chr21 (30586467-30587940)
	1-1476, gnl\|Hg17\|chr14 (35409455-35410925)
	1-1476, gnl\|Mm7\|chr12 (53793811-53795252)

	pgl (0.236967)
	mas (0.210305)
	hea (0.204499)
	mgm (0.180343)
	eye (0.170503)
	cki (0.165235)
	mga (0.160205)
	isp (0.150376)
	bfe (0.149858)
	fat (0.147427)
	lyg (0.133103)
	tra (0.123092)
	cty (0.10408)