Non-Coding RNA Search

Ss1.1-rtra03_b3.5

Sequence:


               
               GATGCAATAATGACCAGGCCAACGCAGGAAAATACTGCTTCCAAAACACTGAATTTTCTA
GGCCAAAGGTGCCCTGAGGATCCAGGACTTTGTGTTCCCATGTGTTCTTCTGCTCCCTGA
CAGCTTCTTACATAAAATAACATGCAGAAAGCTGAATGCACTAACTCACAAAACAGACAC
TTGCACTGAACTCCTAATAAAATGAAGATGTTGGAGAGACAGAAGCCAGCTGTTTATGAC
CACACCACTCCTGTGACAAGGGCTGTGTAGACCACGGTCCCACTGTGGCGTGACTGGAAA
CCCAGACTGCACCTCTGCACATGAACAGTAAGGACTTCCTTAGTCTTTAGATTTTCGTTA
CTTTTGATAACCTGTGTTTGTTCAACTTCAGATGCCAGGAATGCCGCCTGTTCACGGCAA
ACAGAAACAGCTTCTCTGCAACAGCCACTGCAGGCAACTGGATCTTAGGTAGCTAGATCA
TTGCATTTGTTTGGAAATGTTAATATGTTAAATACCAAACTAATATTTCAAAAATATGTA
TATATGATTTTATATCCTTGTTTTTCAGATAGTCTGCTTATAATTTAATATGAAAGTAAC
TGACTCATTCGTAAGATTTCAGTCATGAAACGGTTCTCTTTTTAACAAAAAAGCCACTTT
GTAGATTAAAAATAAATCTGATTTTCAAATTTAAAATTATCCACACACTAGGAAGTAGAA
CTGTGTTAATATATAAGAAATTGGGAGAATAATAAGAATGAAGGATTTTTCTATCATTTT
CATTTTATAAATTGTCACCTGTGAAAATGGTTTTTTGCACATTATTTGTATTTTTCTTTG
TATATGAAATAATTTTTTGTACTTTGTAAAAAATACGGAGCCCATTGTACCTTCAGCTAT
TCGAGACTTTACACAGTACTTCTTTTGTAACTGGATTCCTTTTAACTTTCATTAAGGCGC
TACATGCCTTGCATTCACTAACGACCTTGAATTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGCAATAATGACCAGGCCAACGCAGGAAAATACTGCTTCCAAAACACTGAATTTTCTA
GGCCAAAGGTGCCCTGAGGATCCAGGACTTTGTGTTCCCATGTGTTCTTCTGCTCCCTGA
CAGCTTCTTACATAAAATAACATGCAGAAAGCTGAATGCACTAACTCACAAAACAGACAC
TTGCACTGAACTCCTAATAAAATGAAGATGTTGGAGAGACAGAAGCCAGCTGTTTATGAC
CACACCACTCCTGTGACAAGGGCTGTGTAGACCACGGTCCCACTGTGGCGTGACTGGAAA
CCCAGACTGCACCTCTGCACATGAACAGTAAGGACTTCCTTAGTCTTTAGATTTTCGTTA
CTTTTGATAACCTGTGTTTGTTCAACTTCAGATGCCAGGAATGCCGCCTGTTCACGGCAA
ACAGAAACAGCTTCTCTGCAACAGCCACTGCAGGCAACTGGATCTTAGGTAGCTAGATCA
TTGCATTTGTTTGGAAATGTTAATATGTTAAATACCAAACTAATATTTCAAAAATATGTA
TATATGATTTTATATCCTTGTTTTTCAGATAGTCTGCTTATAATTTAATATGAAAGTAAC
TGACTCATTCGTAAGATTTCAGTCATGAAACGGTTCTCTTTTTAACAAAAAAGCCACTTT
GTAGATTAAAAATAAATCTGATTTTCAAATTTAAAATTATCCACACACTAGGAAGTAGAA
CTGTGTTAATATATAAGAAATTGGGAGAATAATAAGAATGAAGGATTTTTCTATCATTTT
CATTTTATAAATTGTCACCTGTGAAAATGGTTTTTTGCACATTATTTGTATTTTTCTTTG
TATATGAAATAATTTTTTGTACTTTGTAAAAAATACGGAGCCCATTGTACCTTCAGCTAT
TCGAGACTTTACACAGTACTTCTTTTGTAACTGGATTCCTTTTAACTTTCATTAAGGCGC
TACATGCCTTGCATTCACTAACGACCTTGAATTAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               82-199, - strand, RNAz p=0.967907

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               82-199, - strand, RNAz p=0.967907

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-996, gnl|bosTau2|chr15 (29313450-29312466)
               

               
               3-996, gnl|Hg17|chr11 (9757910-9756926)
               

               
               3-996, gnl|Mm7|chr7 (106224178-106223303)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-996, gnl|bosTau2|chr15 (29313450-29312466)
               

               
               3-996, gnl|Hg17|chr11 (9757910-9756926)
               

               
               3-996, gnl|Mm7|chr7 (106224178-106223303)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

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               cmu (0.186393)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               ret (0.128733)
               

               
               cbr (0.127975)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               ecc (0.115035)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               ret (0.128733)
               

               
               cbr (0.127975)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               ecc (0.115035)

	3-996, gnl\|bosTau2\|chr15 (29313450-29312466)
	3-996, gnl\|Hg17\|chr11 (9757910-9756926)
	3-996, gnl\|Mm7\|chr7 (106224178-106223303)

	cmu (0.186393)
	tbr (0.154178)
	fat (0.147427)
	liv (0.146284)
	lin (0.145603)
	csk (0.140746)
	hlv (0.139256)
	ret (0.128733)
	cbr (0.127975)
	thg (0.126791)
	tra (0.123092)
	ecc (0.115035)