Non-Coding RNA Search

Ss1.1-rtra03_d8.5

Sequence:


               
               GTAAAGTGGTTGACAGTGTTAAAGTGTGCACTGCTCGCTTGTTTGACCAACCTAAAATAG
AAGACCCCTATGCAATTAGCTTTTCTCCATGGAATCCTTCTGTACATGATGAAGCCAGAG
AGATGCTGACTCAGAAAAAGAAGCCTGAAGAACAGCACAATAAAAGTGTTCACGTTGCTG
GCTTGTCATGGGTGAAGCCTGGCTCAGTACAACCTTTCAGTAAAGAAGAGAAAACGGTAG
CAACTTAAGAGCCAGTGAATCTGGTGCACCATGCACTTTCCTGCTGGACTTGGGCTGGTT
ACAGCTGACCAGTGGCAGAGGACTGCGTGCAGAGTAAAGCGGTGTGAACGGGGACTGGTG
TCAGTGTTGTCCGTGTATGCTTAGGTTCTAACAGCAAGTTTTGGAAACCTCTCTTTACGT
AATGCATTACTTCTGTCAGAAGTGTCTTTAAGGTGGTTATCTAGTTCAGTACTCCAAATT
ATTGGGGACCTTGAGGCTTAAAGTATTTTTCTGAGTATAATGCTAAAGGTAAGTTGCATT
CATTTAAACTAATAGAGTAGACAGAGTTCAGCACTATCTAATGATTTTTAAATCAGCGGT
TTTAGTTGTACATGGAGAGGAGAGGTAGAGGGGAGCAGTTTCCATAGCTAATAGCACTTT
TAAGCGGAAGATCCTTGGAACCTCAGTCTTCAGCCTACTGTGTTACTGATACACAGACAC
TGTCACTGAGGGACATACTAGGTGAGTGAGAGGAAACCAGAACACTTGTTCATAGCTTTT
TTTTTTTTTTTTAAAGCAAATCACTCACTGTATTTTTATGGCTGGAGGGAGAAAAAGTGT
TAAAATGGTTTCTAATGAAGTCAGATATTTAAATGATGAATGACTAATTGTTTTGTAGAG
ACAATAAACCAACAATAAATGATTAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAAAGTGGTTGACAGTGTTAAAGTGTGCACTGCTCGCTTGTTTGACCAACCTAAAATAG
AAGACCCCTATGCAATTAGCTTTTCTCCATGGAATCCTTCTGTACATGATGAAGCCAGAG
AGATGCTGACTCAGAAAAAGAAGCCTGAAGAACAGCACAATAAAAGTGTTCACGTTGCTG
GCTTGTCATGGGTGAAGCCTGGCTCAGTACAACCTTTCAGTAAAGAAGAGAAAACGGTAG
CAACTTAAGAGCCAGTGAATCTGGTGCACCATGCACTTTCCTGCTGGACTTGGGCTGGTT
ACAGCTGACCAGTGGCAGAGGACTGCGTGCAGAGTAAAGCGGTGTGAACGGGGACTGGTG
TCAGTGTTGTCCGTGTATGCTTAGGTTCTAACAGCAAGTTTTGGAAACCTCTCTTTACGT
AATGCATTACTTCTGTCAGAAGTGTCTTTAAGGTGGTTATCTAGTTCAGTACTCCAAATT
ATTGGGGACCTTGAGGCTTAAAGTATTTTTCTGAGTATAATGCTAAAGGTAAGTTGCATT
CATTTAAACTAATAGAGTAGACAGAGTTCAGCACTATCTAATGATTTTTAAATCAGCGGT
TTTAGTTGTACATGGAGAGGAGAGGTAGAGGGGAGCAGTTTCCATAGCTAATAGCACTTT
TAAGCGGAAGATCCTTGGAACCTCAGTCTTCAGCCTACTGTGTTACTGATACACAGACAC
TGTCACTGAGGGACATACTAGGTGAGTGAGAGGAAACCAGAACACTTGTTCATAGCTTTT
TTTTTTTTTTTTAAAGCAAATCACTCACTGTATTTTTATGGCTGGAGGGAGAAAAAGTGT
TAAAATGGTTTCTAATGAAGTCAGATATTTAAATGATGAATGACTAATTGTTTTGTAGAG
ACAATAAACCAACAATAAATGATTAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|52545568|emb|CAH56392.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|52545568|emb|CAH56392.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               416-532, + strand, RNAz p=0.639328

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               416-532, + strand, RNAz p=0.639328

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC095401, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC095401, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               138-911, gnl|bosTau2|chr18 (21160381-21159591)
               

               
               138-911, gnl|Hg17|chr16 (52083935-52083128)
               

               
               138-911, gnl|Mm7|chr8 (89717250-89716479)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               138-911, gnl|bosTau2|chr18 (21160381-21159591)
               

               
               138-911, gnl|Hg17|chr16 (52083935-52083128)
               

               
               138-911, gnl|Mm7|chr8 (89717250-89716479)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               cbe (0.478469)
               

               
               cmu (0.372787)
               

               
               cte (0.29274)
               

               
               pan (0.23596)
               

               
               mgp (0.230681)
               

               
               cut (0.169924)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               ute (0.132784)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.478469)
               

               
               cmu (0.372787)
               

               
               cte (0.29274)
               

               
               pan (0.23596)
               

               
               mgp (0.230681)
               

               
               cut (0.169924)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               ute (0.132784)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	138-911, gnl\|bosTau2\|chr18 (21160381-21159591)
	138-911, gnl\|Hg17\|chr16 (52083935-52083128)
	138-911, gnl\|Mm7\|chr8 (89717250-89716479)

	cbe (0.478469)
	cmu (0.372787)
	cte (0.29274)
	pan (0.23596)
	mgp (0.230681)
	cut (0.169924)
	ski (0.146735)
	csk (0.140746)
	ute (0.132784)
	bla (0.124347)
	tra (0.123092)
	spc (0.113366)
	nbm (0.0993246)
	eje (0.0988338)
	ldo (0.0970026)