Non-Coding RNA Search

Ss1.1-rtra03_h23.5

Sequence:


               
               CGTCCTGCACCTGCTCAGAAGCATCCCTTCAGTGGATCCTGCAAGCGGCTCCGTGGTCCC
GTTTGTTAGGGTGAAGCTCAACAGGGACCCCTCGAGGGGGCACCCCAGGACCCCAGAGTC
GCCTGTCATCATGAAGAGCAGCAGACGCCTCCTGTGTTAAGAAGAGAAAATTGCACAGGC
ATTATTGATGAATGTGGACTTTTCTGATTTCATCATCTTGTCATTTAAGATGAATGGTAA
ATGTAATATTTATGGTAAGAGATAGAGTTCCCTGGTGGCTCAGTGGGTTAAGGACTGAGT
CACTGCAGTCACAGCTGTGGCTTGGGTTCAGTCTCTGGCCTGGAAACTTCTAAATGCTGC
GGGTGAGGCCCCAAACAAAACAAAACTATGGTAAGAGAATTCTCAAGGTTTTGCTTTGGC
TTTGCGGGGGGGGCACTGGATGAGCTCAGAGCAGTGTTGTGAGTGGCACGGCCCCCAGAG
ACGAGGGTGGGAGAACATGGCCTTGGAACACAGCCCACTGGAGATGCACAGATGAGATTT
TGGATATGAAATGTATCAGTAAAGTAAGTCGTGAGCGATTGCAGGTGTGTCATGTGAATG
GAAGAGCAGATTTCGTTAAGTTATTCACTAGGGACTTGACTGTAGTTCGTTCCAATCCTT
TTTCTCCAAATCTGCTTTGCTGAAAGTGGCAGGAAAGGGTGTGTGTGAAGACATAAAGGG
ACAGGGCAGGTGGATGGAGTGACGTCCATCAGTGGTGGAGTCGTGTTGGTTTGCAAGGTA
GAAGCAGTGATTTTTTTTTTAAAGACCCCACCAATTAAATACAAACATTCCTAAGCGTGT
CCGGGAACTACCGTTTACTTATGAATTAAAAAGTCTTTTTTCTCAGACTCTTAAATTATG
TCATTTATGTAATAAGGATGATTTGTATTTTCAGAGAAAATTCTCTTTTGAAATCACAGA
TCTTTTAAAAAGAATCAGTATTCCATTCGATACTTGTCCTGTTTCTAACCTTAGGAATAG
TATTTGATGAAAATGACTTTTTAAATTTATCTTTGGCAACTGTCCCCCTCCATTTTGCTT
TATGACTTCTTCATTTAATAATAAATTATCTTTTAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTCCTGCACCTGCTCAGAAGCATCCCTTCAGTGGATCCTGCAAGCGGCTCCGTGGTCCC
GTTTGTTAGGGTGAAGCTCAACAGGGACCCCTCGAGGGGGCACCCCAGGACCCCAGAGTC
GCCTGTCATCATGAAGAGCAGCAGACGCCTCCTGTGTTAAGAAGAGAAAATTGCACAGGC
ATTATTGATGAATGTGGACTTTTCTGATTTCATCATCTTGTCATTTAAGATGAATGGTAA
ATGTAATATTTATGGTAAGAGATAGAGTTCCCTGGTGGCTCAGTGGGTTAAGGACTGAGT
CACTGCAGTCACAGCTGTGGCTTGGGTTCAGTCTCTGGCCTGGAAACTTCTAAATGCTGC
GGGTGAGGCCCCAAACAAAACAAAACTATGGTAAGAGAATTCTCAAGGTTTTGCTTTGGC
TTTGCGGGGGGGGCACTGGATGAGCTCAGAGCAGTGTTGTGAGTGGCACGGCCCCCAGAG
ACGAGGGTGGGAGAACATGGCCTTGGAACACAGCCCACTGGAGATGCACAGATGAGATTT
TGGATATGAAATGTATCAGTAAAGTAAGTCGTGAGCGATTGCAGGTGTGTCATGTGAATG
GAAGAGCAGATTTCGTTAAGTTATTCACTAGGGACTTGACTGTAGTTCGTTCCAATCCTT
TTTCTCCAAATCTGCTTTGCTGAAAGTGGCAGGAAAGGGTGTGTGTGAAGACATAAAGGG
ACAGGGCAGGTGGATGGAGTGACGTCCATCAGTGGTGGAGTCGTGTTGGTTTGCAAGGTA
GAAGCAGTGATTTTTTTTTTAAAGACCCCACCAATTAAATACAAACATTCCTAAGCGTGT
CCGGGAACTACCGTTTACTTATGAATTAAAAAGTCTTTTTTCTCAGACTCTTAAATTATG
TCATTTATGTAATAAGGATGATTTGTATTTTCAGAGAAAATTCTCTTTTGAAATCACAGA
TCTTTTAAAAAGAATCAGTATTCCATTCGATACTTGTCCTGTTTCTAACCTTAGGAATAG
TATTTGATGAAAATGACTTTTTAAATTTATCTTTGGCAACTGTCCCCCTCCATTTTGCTT
TATGACTTCTTCATTTAATAATAAATTATCTTTTAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               705-824, - strand, RNAz p=0.788514

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               705-824, - strand, RNAz p=0.788514

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               6-280, gnl|bosTau2|chr19 (16766452-16766726)
               

               
               6-280, gnl|Hg17|chr17 (291319-291047)
               

               
               6-280, gnl|Mm7|chr11 (76101699-76101460)
               


               
               374-1120, gnl|bosTau2|chr19 (16766908-16767633)
               

               
               374-1120, gnl|Hg17|chr17 (290778-289997)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-280, gnl|bosTau2|chr19 (16766452-16766726)
               

               
               6-280, gnl|Hg17|chr17 (291319-291047)
               

               
               6-280, gnl|Mm7|chr11 (76101699-76101460)
               


               
               374-1120, gnl|bosTau2|chr19 (16766908-16767633)
               

               
               374-1120, gnl|Hg17|chr17 (290778-289997)

Expressed library(ies): 24 entry(ies)

More info

Expressed library(ies): 24 entry(ies)

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               gul (0.355177)
               

               
               sme (0.305437)
               

               
               mas (0.210305)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               nje (0.16592)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               cov (0.132153)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               med (0.116252)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.355177)
               

               
               sme (0.305437)
               

               
               mas (0.210305)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               nje (0.16592)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               cov (0.132153)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               med (0.116252)

	6-280, gnl\|bosTau2\|chr19 (16766452-16766726)
	6-280, gnl\|Hg17\|chr17 (291319-291047)
	6-280, gnl\|Mm7\|chr11 (76101699-76101460)

	374-1120, gnl\|bosTau2\|chr19 (16766908-16767633)
	374-1120, gnl\|Hg17\|chr17 (290778-289997)

	gul (0.355177)
	sme (0.305437)
	mas (0.210305)
	col (0.195008)
	fty (0.17584)
	fbs (0.175346)
	sin (0.174948)
	nje (0.16592)
	liv (0.146284)
	lin (0.145603)
	spl (0.143184)
	hyp (0.142837)
	hlv (0.139256)
	che (0.136314)
	ste (0.135208)
	cov (0.132153)
	ret (0.128733)
	sug (0.127291)
	thg (0.126791)
	ese (0.126502)
	bla (0.124347)
	tra (0.123092)
	eru (0.120048)
	med (0.116252)