Non-Coding RNA Search

Ss1.1-rtra03_n1.5

Sequence:


               
               TTAATAGAGTCTCTGATACAATTATATGGCGCTTGTAGGGTATTTTTCCCCCTTTATTCT
GATTATATTCTAGGCCATAAACACTGGAAGGGCTTCATTTCATTATATAATGCAGTATTG
ATTGCTTGCATTCCTCCTGTGCATCTTAGCTTTATGCTCAACTTCTACCCTTAATTATTT
GTATTAATCGAGGGGTACCAAACACAGGTAAGTCAAATCCTGGATAAATGAACACCACAG
ATGTAAGGTTTTTCCTCTCGACATGGCCTATGAGAAGCCTTTCCAGCTCTGTAACCCCTA
AAACATTTAAAGCAGAAAGGGCAGGAGTGGCCTAAGATGGAGCTAAATCCCTTATGAGCA
TTCCTTTTTCTGCCCTTGCCCCTGAACTTAAGAGGCTAGTACACATATCCTAGTGGTCTG
CTCTCTAAGCTGCTAGAAAGCCAATCTCTGGCACAGTTACTGATGTGTTCACTGAATCTA
TGGCTCACAAATAACTGAGAATTGACTTTGGTTGAAGAAGTGACTGTGGCATGGAAACAG
AATGGTTAATGTTAGCTAGAGACCTGGAAATCTGGGTTCTTATTCCTAGTTCTTCATTTC
TGTCACATATACTTAATTGACATGACATTAGAACATTAACTTTTTCCTGTTATATAGACC
ATCTTTTTAACTAGTAACTTTTAACTTAATTAAAAGTTCTTAGTGAAGTGTTTAGTCTTG
ATTTTTTTGCTTATAAAATTTCTCTGCACTCCTGACAAAGACAGTATGCAATAGCACATA
AAGTATTCCTGTTAACCTAACTAGTAATTTATATTATTCTATTTAATTCCTAAAGCCTCT
ACACGTGGCCTTTTTATTGAGCACACTCTTACTCATTAACTTGGCTTATAAACATTCACC
TGAACTGTGGCTACAATATTTTTAAAATAATCCAGAAAGAAGAAAGATAAAGCTTCACAT
TTTAATCACTTGTGGCTCTTAAACATTCCACAAATGCCATTAAGAGTTTATTTTAGAGTT
ATTTAATGTTCTTTTATGCAAAATAATTTTTTTTTTTTGCTTTCCACATGGAAAAAGTTA
GCATTGGAACTGTGTATAGTGGAAGATTTTTAATACATATCTATTCAAGCACTATCCCAT
GTCAGCAAGTCATATTTTAAACTACCTGGAGAAAGTTTCAGAAGTAACTATCAAGTACAG
CTGTTCCAAGTTACTTTTAGTGTGTTCGTGGTATGCGATGTGATAGTGTTTATAGAATTA
TTTACATCCTACATTTTCCAAGGAACCTTAGAAGTCTCTCACCCTGAATCAAAGTCTGTC
ACTCTAAACGAATATGTGCTAAAATTTGACCAGCTCAGCTTAAGACACAAAACAGCAACT
TGAAGGGGAAATAGAGTTTAAATTAATGGGTCAAATTTTTGTTGTTGCAATAGTAGGCTT
AGTCTTAACATTATAATATTTCTAAATGAAAATATGTATGTTACCATGTCCGATGATTAC
TTTGTTAAGAGCAGAAGTGGTCGTGTGATGTACTAAATGTTAATTGCTGTTTTTAAATGT
TTAAATCATGCCAAACAAATCATATCTGTGCCATCCAGGGTTTATTGTAATCTTTTACTG
AGTACTTGGATTGGGATAAAGGGCTTGTACTATGCACTTTTTATTAATGAATAAATAGAA
AACATTAGTAACAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAATAGAGTCTCTGATACAATTATATGGCGCTTGTAGGGTATTTTTCCCCCTTTATTCT
GATTATATTCTAGGCCATAAACACTGGAAGGGCTTCATTTCATTATATAATGCAGTATTG
ATTGCTTGCATTCCTCCTGTGCATCTTAGCTTTATGCTCAACTTCTACCCTTAATTATTT
GTATTAATCGAGGGGTACCAAACACAGGTAAGTCAAATCCTGGATAAATGAACACCACAG
ATGTAAGGTTTTTCCTCTCGACATGGCCTATGAGAAGCCTTTCCAGCTCTGTAACCCCTA
AAACATTTAAAGCAGAAAGGGCAGGAGTGGCCTAAGATGGAGCTAAATCCCTTATGAGCA
TTCCTTTTTCTGCCCTTGCCCCTGAACTTAAGAGGCTAGTACACATATCCTAGTGGTCTG
CTCTCTAAGCTGCTAGAAAGCCAATCTCTGGCACAGTTACTGATGTGTTCACTGAATCTA
TGGCTCACAAATAACTGAGAATTGACTTTGGTTGAAGAAGTGACTGTGGCATGGAAACAG
AATGGTTAATGTTAGCTAGAGACCTGGAAATCTGGGTTCTTATTCCTAGTTCTTCATTTC
TGTCACATATACTTAATTGACATGACATTAGAACATTAACTTTTTCCTGTTATATAGACC
ATCTTTTTAACTAGTAACTTTTAACTTAATTAAAAGTTCTTAGTGAAGTGTTTAGTCTTG
ATTTTTTTGCTTATAAAATTTCTCTGCACTCCTGACAAAGACAGTATGCAATAGCACATA
AAGTATTCCTGTTAACCTAACTAGTAATTTATATTATTCTATTTAATTCCTAAAGCCTCT
ACACGTGGCCTTTTTATTGAGCACACTCTTACTCATTAACTTGGCTTATAAACATTCACC
TGAACTGTGGCTACAATATTTTTAAAATAATCCAGAAAGAAGAAAGATAAAGCTTCACAT
TTTAATCACTTGTGGCTCTTAAACATTCCACAAATGCCATTAAGAGTTTATTTTAGAGTT
ATTTAATGTTCTTTTATGCAAAATAATTTTTTTTTTTTGCTTTCCACATGGAAAAAGTTA
GCATTGGAACTGTGTATAGTGGAAGATTTTTAATACATATCTATTCAAGCACTATCCCAT
GTCAGCAAGTCATATTTTAAACTACCTGGAGAAAGTTTCAGAAGTAACTATCAAGTACAG
CTGTTCCAAGTTACTTTTAGTGTGTTCGTGGTATGCGATGTGATAGTGTTTATAGAATTA
TTTACATCCTACATTTTCCAAGGAACCTTAGAAGTCTCTCACCCTGAATCAAAGTCTGTC
ACTCTAAACGAATATGTGCTAAAATTTGACCAGCTCAGCTTAAGACACAAAACAGCAACT
TGAAGGGGAAATAGAGTTTAAATTAATGGGTCAAATTTTTGTTGTTGCAATAGTAGGCTT
AGTCTTAACATTATAATATTTCTAAATGAAAATATGTATGTTACCATGTCCGATGATTAC
TTTGTTAAGAGCAGAAGTGGTCGTGTGATGTACTAAATGTTAATTGCTGTTTTTAAATGT
TTAAATCATGCCAAACAAATCATATCTGTGCCATCCAGGGTTTATTGTAATCTTTTACTG
AGTACTTGGATTGGGATAAAGGGCTTGTACTATGCACTTTTTATTAATGAATAAATAGAA
AACATTAGTAACAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-511, gnl|bosTau2|chr6 (30678546-30679063)
               

               
               1-511, gnl|Hg17|chr4 (39374278-39373761)
               

               
               1-511, gnl|Mm7|chr5 (64803976-64803375)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-511, gnl|bosTau2|chr6 (30678546-30679063)
               

               
               1-511, gnl|Hg17|chr4 (39374278-39373761)
               

               
               1-511, gnl|Mm7|chr5 (64803976-64803375)

Expressed library(ies): 24 entry(ies)

More info

Expressed library(ies): 24 entry(ies)

Help | Less info


               
               aor (0.781097)
               

               
               sag (0.730861)
               

               
               tra (0.61546)
               

               
               pro (0.512033)
               

               
               ret (0.3862)
               

               
               sug (0.381874)
               

               
               rec (0.346141)
               

               
               fco (0.314416)
               

               
               cty (0.31224)
               

               
               clu (0.239292)
               

               
               jca (0.22792)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               mga (0.160205)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               bla (0.124347)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.781097)
               

               
               sag (0.730861)
               

               
               tra (0.61546)
               

               
               pro (0.512033)
               

               
               ret (0.3862)
               

               
               sug (0.381874)
               

               
               rec (0.346141)
               

               
               fco (0.314416)
               

               
               cty (0.31224)
               

               
               clu (0.239292)
               

               
               jca (0.22792)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               mga (0.160205)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               bla (0.124347)

	1-511, gnl\|bosTau2\|chr6 (30678546-30679063)
	1-511, gnl\|Hg17\|chr4 (39374278-39373761)
	1-511, gnl\|Mm7\|chr5 (64803976-64803375)

	aor (0.781097)
	sag (0.730861)
	tra (0.61546)
	pro (0.512033)
	ret (0.3862)
	sug (0.381874)
	rec (0.346141)
	fco (0.314416)
	cty (0.31224)
	clu (0.239292)
	jca (0.22792)
	fcc (0.197785)
	col (0.195008)
	mga (0.160205)
	lun (0.150489)
	ski (0.146735)
	liv (0.146284)
	lin (0.145603)
	hyp (0.142837)
	lnt (0.142308)
	pla (0.133672)
	lyg (0.133103)
	kid (0.129735)
	bla (0.124347)