Non-Coding RNA Search

Ss1.1-rtra04_a23.5

Sequence:


               
               TGAATTGTGACTCATTTCTTCAGTGTTATATAGATCTTTCCCCGTTGGTATTATATGTAG
AGGATTCTTTATCTTTATGCCTAATTATTATACTTATTAATTTTAAGGTATACATTTAAA
TTATAGCAACTTTATTGTGATTTGTATCCCAGAATGTATTGTTTTTTTTTAATGTATGCA
TGATTTTGAGGGAAGTTAAAAATGATTTTTTTTCACCTCTTGTACATTTTAAAACCAAAC
CAAATCTACTTGCCAAGCATTATATCACTGATAAAATAGTTTTCTCCCTTTTATTATTTT
GTTCATCTATCATAGAATCCCCTTATGCTATGGCTTGGTATTATTCAGAATTAGCTATTT
TGCAAGTCTAATTATCTTCCTAAAAGCTTACTGTAACATGGTTAGCCTATAAGGCAGTGT
TGGTTCCCTCCCAGTACCAGTCTCATAAAGGGGTTCCCCTGTACTTTCCCCACATTTCTT
CATTATTGTTTTTCCTCTGGAAATATAACCAAATTAAGATTGGATGGACTTTATGGAGAT
AATAATAAGACAATACTGTATAATTAATTTTACTTAATAGATTATCATCTGTGAGAAAAG
ATGTTTAAATGTGGTTAATGACTTCATATTATAAAACAGTTTTACACTTAATATTCATGT
TAATATTGGGTGCAATAATTTAGTAGTTTTAGCTTTAGTTAGAAATAACTGGATCTTTCT
GCTGACAACTTAGGTTGTATGAGTTATGCTTAAAAGCTTTAAATCTAATGTTTCCTGTAC
CTGCCACACCATGTTAGAATGTGTCCTTCAAACATATCCTCCTGCAACTTCTCAAACTGT
ACTAAATTGATATTTCTTGAAGTCAAACTCTGTGCTAACAGATCTTCATTTTAAATAGAA
TACGGTTTTAATTTTTGATAAGCTGCTGAATTTTAAAGAGAGTTTTTTGGGGCCACCAAA
TATTTTGGATCATGCAGAGAATATATATTGTACTGTAGTAATTTTGTATTTACATTTGTA
TGATGTGACATAATAGATGTGAATGTTAATCACTGCTTGACTATGTTAATAAAGTTGTTT
AACTATAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAATTGTGACTCATTTCTTCAGTGTTATATAGATCTTTCCCCGTTGGTATTATATGTAG
AGGATTCTTTATCTTTATGCCTAATTATTATACTTATTAATTTTAAGGTATACATTTAAA
TTATAGCAACTTTATTGTGATTTGTATCCCAGAATGTATTGTTTTTTTTTAATGTATGCA
TGATTTTGAGGGAAGTTAAAAATGATTTTTTTTCACCTCTTGTACATTTTAAAACCAAAC
CAAATCTACTTGCCAAGCATTATATCACTGATAAAATAGTTTTCTCCCTTTTATTATTTT
GTTCATCTATCATAGAATCCCCTTATGCTATGGCTTGGTATTATTCAGAATTAGCTATTT
TGCAAGTCTAATTATCTTCCTAAAAGCTTACTGTAACATGGTTAGCCTATAAGGCAGTGT
TGGTTCCCTCCCAGTACCAGTCTCATAAAGGGGTTCCCCTGTACTTTCCCCACATTTCTT
CATTATTGTTTTTCCTCTGGAAATATAACCAAATTAAGATTGGATGGACTTTATGGAGAT
AATAATAAGACAATACTGTATAATTAATTTTACTTAATAGATTATCATCTGTGAGAAAAG
ATGTTTAAATGTGGTTAATGACTTCATATTATAAAACAGTTTTACACTTAATATTCATGT
TAATATTGGGTGCAATAATTTAGTAGTTTTAGCTTTAGTTAGAAATAACTGGATCTTTCT
GCTGACAACTTAGGTTGTATGAGTTATGCTTAAAAGCTTTAAATCTAATGTTTCCTGTAC
CTGCCACACCATGTTAGAATGTGTCCTTCAAACATATCCTCCTGCAACTTCTCAAACTGT
ACTAAATTGATATTTCTTGAAGTCAAACTCTGTGCTAACAGATCTTCATTTTAAATAGAA
TACGGTTTTAATTTTTGATAAGCTGCTGAATTTTAAAGAGAGTTTTTTGGGGCCACCAAA
TATTTTGGATCATGCAGAGAATATATATTGTACTGTAGTAATTTTGTATTTACATTTGTA
TGATGTGACATAATAGATGTGAATGTTAATCACTGCTTGACTATGTTAATAAAGTTGTTT
AACTATAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               666-903, - strand, RNAz p=0.78619

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               666-903, - strand, RNAz p=0.78619

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1087, gnl|bosTau2|chr20 (5298219-5299300)
               

               
               1-1087, gnl|Hg17|chr5 (72244861-72245971)
               

               
               1-1087, gnl|Mm7|chr13 (95909922-95908816)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1087, gnl|bosTau2|chr20 (5298219-5299300)
               

               
               1-1087, gnl|Hg17|chr5 (72244861-72245971)
               

               
               1-1087, gnl|Mm7|chr13 (95909922-95908816)

Expressed library(ies): 20 entry(ies)

More info

Expressed library(ies): 20 entry(ies)

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               tbr (0.616713)
               

               
               amn (0.417711)
               

               
               ret (0.3862)
               

               
               sin (0.349895)
               

               
               fco (0.314416)
               

               
               lin (0.291206)
               

               
               hyp (0.285673)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               eye (0.170503)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               ldo (0.0970026)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.616713)
               

               
               amn (0.417711)
               

               
               ret (0.3862)
               

               
               sin (0.349895)
               

               
               fco (0.314416)
               

               
               lin (0.291206)
               

               
               hyp (0.285673)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               eye (0.170503)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               ldo (0.0970026)

	1-1087, gnl\|bosTau2\|chr20 (5298219-5299300)
	1-1087, gnl\|Hg17\|chr5 (72244861-72245971)
	1-1087, gnl\|Mm7\|chr13 (95909922-95908816)

	tbr (0.616713)
	amn (0.417711)
	ret (0.3862)
	sin (0.349895)
	fco (0.314416)
	lin (0.291206)
	hyp (0.285673)
	tes (0.207814)
	aor (0.195274)
	sag (0.182715)
	eye (0.170503)
	isp (0.150376)
	fat (0.147427)
	ste (0.135208)
	pla (0.133672)
	nmm (0.132802)
	kid (0.129735)
	sug (0.127291)
	tra (0.123092)
	ldo (0.0970026)