Non-Coding RNA Search

Ss1.1-rtra04_b12.5

Sequence:


               
               CTCATCTGGCATCTTTATTTAATACGAGAGCCTCAGAGACCACTAACCACTCCTGGAACT
GGTATCTAGCTCCTCATGTCTTACTTTGGGTTTATTTATGCTTCAAATACAGCTGTTTGC
CACGTGCATGAATATACGAATGTTTGTGTGTGGTTATGTGAGGCTTTACCAAACAGAGTT
CTCTGAAGGGTGAACTTTTTACTTCTGATGCTTTTATATGACTCAGTTAAATTTGAATGG
AGGATGAGATATAACTTAAAAGTCCTTGCCTGCTTAAAGAATAGCCTGATGTCCACGTTG
TTTTTGCATTGGTGGCAAATACACAGAATTGGTTTTAAAGCTACAGCTCTCATAAAAGCT
TTCTCTGGCTGAGTAGCACAGAAAAGTATTTTAACCCACCTCAGAGACACTGGTCATAGC
AAAGTGCCAAAATGGCTTGAATGGGAGAACGAGTTGGGCCCCACACTTTTCACGCACAAT
ACTAATCTCTTGCCCCAAGAGAGTAAACTCTTGGAAAAGGGCATTTTTTATTATTTTACA
CTTTCAACCCTTGGCTTTTGGGCTGAATCATCCCTTATAAGTGCCATGTAAAAGTTAGAC
TGTTAGAGTTCATAGAACACACAATGGGCCTGAATGAATAGCCTAGTCAACTCTCAACGA
TCAAATACTGTTTATGTAATAATCCCCTGGAAAGAAGACTCTTACTAGGGTTTGGTTTGT
GATATAATTATGAAGATTAAAAGAGATGTTTAATATGTGGCAAGAGGAAATCCATCTTAT
GACTTACACTGAGGTCATAGCTTTTCTATAATACCCAGCTTCCTTGGTTTTTTGAGCTCC
GTACCACACACGTAAACCTGTATTATGAATTGTATATTACAAAGTCATAAATGTGCCATA
AGGATATGTAGCCTATTCTGGCTGGAATTGTTAAAAGTTAGTCTGCTAGATTTAGTTGTG
AGATTTTATTTTTGTTTCCAAAGTCTAACAAGTCCTTGCTTGGTGGCATTAAATTAAATG
ATTTCTTGAAACTGCTTTGGTGGCACTTTTGTAAATGGATTGCTTCTAGATCATTAAGAA
CCAAGCCTAAAGCTCATCTAACTGTGAATACTTAGAATTGTAGATTAATCATGATCTAGA
TTTGTGAGTTGACTGACAAAGCACTTGAACAAAAATTAAACGGCATTTGAGAATTTCTTT
ATGTAACTTAGCTGTAAAAAATGAGAGTGTTGGTTTGGTTTTAAAATCTGGTAACTCCAT
GATGAGAAGAAATTTATTTTATAAGTGTTATGACTCTAATAAAGTATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCATCTGGCATCTTTATTTAATACGAGAGCCTCAGAGACCACTAACCACTCCTGGAACT
GGTATCTAGCTCCTCATGTCTTACTTTGGGTTTATTTATGCTTCAAATACAGCTGTTTGC
CACGTGCATGAATATACGAATGTTTGTGTGTGGTTATGTGAGGCTTTACCAAACAGAGTT
CTCTGAAGGGTGAACTTTTTACTTCTGATGCTTTTATATGACTCAGTTAAATTTGAATGG
AGGATGAGATATAACTTAAAAGTCCTTGCCTGCTTAAAGAATAGCCTGATGTCCACGTTG
TTTTTGCATTGGTGGCAAATACACAGAATTGGTTTTAAAGCTACAGCTCTCATAAAAGCT
TTCTCTGGCTGAGTAGCACAGAAAAGTATTTTAACCCACCTCAGAGACACTGGTCATAGC
AAAGTGCCAAAATGGCTTGAATGGGAGAACGAGTTGGGCCCCACACTTTTCACGCACAAT
ACTAATCTCTTGCCCCAAGAGAGTAAACTCTTGGAAAAGGGCATTTTTTATTATTTTACA
CTTTCAACCCTTGGCTTTTGGGCTGAATCATCCCTTATAAGTGCCATGTAAAAGTTAGAC
TGTTAGAGTTCATAGAACACACAATGGGCCTGAATGAATAGCCTAGTCAACTCTCAACGA
TCAAATACTGTTTATGTAATAATCCCCTGGAAAGAAGACTCTTACTAGGGTTTGGTTTGT
GATATAATTATGAAGATTAAAAGAGATGTTTAATATGTGGCAAGAGGAAATCCATCTTAT
GACTTACACTGAGGTCATAGCTTTTCTATAATACCCAGCTTCCTTGGTTTTTTGAGCTCC
GTACCACACACGTAAACCTGTATTATGAATTGTATATTACAAAGTCATAAATGTGCCATA
AGGATATGTAGCCTATTCTGGCTGGAATTGTTAAAAGTTAGTCTGCTAGATTTAGTTGTG
AGATTTTATTTTTGTTTCCAAAGTCTAACAAGTCCTTGCTTGGTGGCATTAAATTAAATG
ATTTCTTGAAACTGCTTTGGTGGCACTTTTGTAAATGGATTGCTTCTAGATCATTAAGAA
CCAAGCCTAAAGCTCATCTAACTGTGAATACTTAGAATTGTAGATTAATCATGATCTAGA
TTTGTGAGTTGACTGACAAAGCACTTGAACAAAAATTAAACGGCATTTGAGAATTTCTTT
ATGTAACTTAGCTGTAAAAAATGAGAGTGTTGGTTTGGTTTTAAAATCTGGTAACTCCAT
GATGAGAAGAAATTTATTTTATAAGTGTTATGACTCTAATAAAGTATT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               825-940, - strand, RNAz p=0.927499

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               825-940, - strand, RNAz p=0.927499

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               864-992, - strand, RNAmicro p=0.990359

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               864-992, - strand, RNAmicro p=0.990359

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               19-1254, gnl|bosTau2|chr23 (13575052-13573820)
               

               
               19-1254, gnl|Hg17|chr8 (120325849-120327030)
               

               
               19-1254, gnl|Mm7|chr15 (54661722-54662915)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-1254, gnl|bosTau2|chr23 (13575052-13573820)
               

               
               19-1254, gnl|Hg17|chr8 (120325849-120327030)
               

               
               19-1254, gnl|Mm7|chr15 (54661722-54662915)

Expressed library(ies): 22 entry(ies)

More info

Expressed library(ies): 22 entry(ies)

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               rec (0.519211)
               

               
               pro (0.512033)
               

               
               tra (0.492368)
               

               
               lin (0.436808)
               

               
               sin (0.349895)
               

               
               duo (0.345602)
               

               
               fco (0.314416)
               

               
               fat (0.294855)
               

               
               liv (0.292569)
               

               
               tes (0.207814)
               

               
               col (0.195008)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.519211)
               

               
               pro (0.512033)
               

               
               tra (0.492368)
               

               
               lin (0.436808)
               

               
               sin (0.349895)
               

               
               duo (0.345602)
               

               
               fco (0.314416)
               

               
               fat (0.294855)
               

               
               liv (0.292569)
               

               
               tes (0.207814)
               

               
               col (0.195008)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	19-1254, gnl\|bosTau2\|chr23 (13575052-13573820)
	19-1254, gnl\|Hg17\|chr8 (120325849-120327030)
	19-1254, gnl\|Mm7\|chr15 (54661722-54662915)

	rec (0.519211)
	pro (0.512033)
	tra (0.492368)
	lin (0.436808)
	sin (0.349895)
	duo (0.345602)
	fco (0.314416)
	fat (0.294855)
	liv (0.292569)
	tes (0.207814)
	col (0.195008)
	ton (0.1755)
	eye (0.170503)
	nje (0.16592)
	nco (0.161734)
	ova (0.129132)
	ret (0.128733)
	bla (0.124347)
	pgl (0.118483)
	ecc (0.115035)
	cty (0.10408)
	jej (0.0989218)