Non-Coding RNA Search

Ss1.1-rtra04_c10.5

Sequence:


               
               GAAAGAAAAAGGAAAGGACAGTATCCAGTTCCCAAACTTATTTCAGTACCTTTCTCCTAG
ACAACCTAGTCCTGTGCTCTACTGTTCTGAGCAACAATTATTTTGGAAATGCTGGGAAAA
CAGTTTAAAAAAAAAAATGAAGAAAAGTATTTTACCTGGACAAAATCGAGGTCATCCTTT
CCCGAGATGAAACAATTATCATCTTCAAATGTGTCTGCCAGAGAATATACAAATCATGAG
ATACAGCAAAGGAATAGCAAAGTTAACAGGTTTTATATCTGAATCAATTAATACATCATC
ATGATTCTGCTATTTACAACATCAAAATGGTAACAGCTGACTATTGCTGGTGTGTTTTAT
TAATCTACATTAAATCTCTGAATATACTGACCTTAATTCAGTCCCTAAACTAAATGGGTT
CCAGTTAATTTTATATATATTTACACACATATATATAATTTTTTTAGGGCTGCACCTGTG
GCATGTGGAGGTTCCCAGGCTAGGGGTCGAATCGGAGCTGTAGCTGCCGGCCTAAGCCAC
AGCCACTCAGGATCCGAGCAGCGTCTGCGACCTACACCACAGCTCACGGCAACACTGGAT
GCTTAACCCACTGAGAGGCCAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAGAAAAAGGAAAGGACAGTATCCAGTTCCCAAACTTATTTCAGTACCTTTCTCCTAG
ACAACCTAGTCCTGTGCTCTACTGTTCTGAGCAACAATTATTTTGGAAATGCTGGGAAAA
CAGTTTAAAAAAAAAAATGAAGAAAAGTATTTTACCTGGACAAAATCGAGGTCATCCTTT
CCCGAGATGAAACAATTATCATCTTCAAATGTGTCTGCCAGAGAATATACAAATCATGAG
ATACAGCAAAGGAATAGCAAAGTTAACAGGTTTTATATCTGAATCAATTAATACATCATC
ATGATTCTGCTATTTACAACATCAAAATGGTAACAGCTGACTATTGCTGGTGTGTTTTAT
TAATCTACATTAAATCTCTGAATATACTGACCTTAATTCAGTCCCTAAACTAAATGGGTT
CCAGTTAATTTTATATATATTTACACACATATATATAATTTTTTTAGGGCTGCACCTGTG
GCATGTGGAGGTTCCCAGGCTAGGGGTCGAATCGGAGCTGTAGCTGCCGGCCTAAGCCAC
AGCCACTCAGGATCCGAGCAGCGTCTGCGACCTACACCACAGCTCACGGCAACACTGGAT
GCTTAACCCACTGAGAGGCCAGAG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-433, gnl|bosTau2|chr11 (18802429-18802848)
               

               
               6-433, gnl|Hg17|chr2 (37350986-37351412)
               

               
               6-433, gnl|Mm7|chr17 (77222954-77223314)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-433, gnl|bosTau2|chr11 (18802429-18802848)
               

               
               6-433, gnl|Hg17|chr2 (37350986-37351412)
               

               
               6-433, gnl|Mm7|chr17 (77222954-77223314)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               pro (0.512033)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               tra (0.123092)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               tra (0.123092)

	6-433, gnl\|bosTau2\|chr11 (18802429-18802848)
	6-433, gnl\|Hg17\|chr2 (37350986-37351412)
	6-433, gnl\|Mm7\|chr17 (77222954-77223314)