Non-Coding RNA Search

Ss1.1-rtra04_e13.5

Sequence:


               
               ATGGAGGTTCCCAGGCTAGGGGTCGAATCGGAGCTGTAGCCACCAGCCTATGCCAGAGCC
ACAGCAACGCGGAATCCAAGCCGCGTCTGCAACCTACACCACAGCTCACGGCAATGCCGG
ATCCTTAACCCACTGAGCAAAGCCAGGGATCGAACCCGCAACCTCATGGTTCCTAGTCGG
ATTCGTTAACCACTGCGCCATGACGGGAACTCCCCCGAAATAATTATTTAAAGGTTTCTT
TCAGAGAAATTAACTGAGTTGAATCAAAACTCAATTAATGGATCAAAAGATCCTTCAGAT
CTTCAGTCAATCCATGAGACTTAATGCAGTTTCAAGGAATGCATAGTGACTTGGCTGGCC
AAGTTGCATTTTTATTGAAGTAACTTAATGAATGCCTTTGAGTTCTTTTGGAGGTACAGA
TTTTTTTTTTATACTAGTAACTTTTATGCATTTTTAAATAAATTTCTTTTCACAAATGGT
TTGTAGTGCTAAATTACATTTAGGCTAAGAACAGGCAAAGGTAGAACATATCAGGAATTT
ATAATAAAATTGCCTCATAATCTCTACAACAGTATCCAGATTTTCTCTTCTGGTAACTTT
TCTTGCCTAAATGGTATACGAGATATATCTCAAAGTGTCAAAAGTTTTAGACTTTTTTTT
AGTAATTACTCTGACATTTGCTACTATAGTAACCAAGCACTCATTATATATGCATCCTCC
AAATGTTTTGTACTTATTTATAGGAAAATTGCACTAATGAGATTAATAATGTGAAATGCA
GTTTTCTTGCAAAATTAGCATTAGAGAATTGATTTTAGAAGACAGATCTTTAAGGTACAA
AAGTGCAATAAAATAGTAAACTATAGGAATATAGATAGCAAGAAAATAATAAAAGTGGAC
TTGTTTATAGTAAATATTGTAACCAACCATTTTTATTAACTATATCTATATCTCATTAAG
GGAAAGTTTATATGTTTTGTTATTAATATTTTGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGAGGTTCCCAGGCTAGGGGTCGAATCGGAGCTGTAGCCACCAGCCTATGCCAGAGCC
ACAGCAACGCGGAATCCAAGCCGCGTCTGCAACCTACACCACAGCTCACGGCAATGCCGG
ATCCTTAACCCACTGAGCAAAGCCAGGGATCGAACCCGCAACCTCATGGTTCCTAGTCGG
ATTCGTTAACCACTGCGCCATGACGGGAACTCCCCCGAAATAATTATTTAAAGGTTTCTT
TCAGAGAAATTAACTGAGTTGAATCAAAACTCAATTAATGGATCAAAAGATCCTTCAGAT
CTTCAGTCAATCCATGAGACTTAATGCAGTTTCAAGGAATGCATAGTGACTTGGCTGGCC
AAGTTGCATTTTTATTGAAGTAACTTAATGAATGCCTTTGAGTTCTTTTGGAGGTACAGA
TTTTTTTTTTATACTAGTAACTTTTATGCATTTTTAAATAAATTTCTTTTCACAAATGGT
TTGTAGTGCTAAATTACATTTAGGCTAAGAACAGGCAAAGGTAGAACATATCAGGAATTT
ATAATAAAATTGCCTCATAATCTCTACAACAGTATCCAGATTTTCTCTTCTGGTAACTTT
TCTTGCCTAAATGGTATACGAGATATATCTCAAAGTGTCAAAAGTTTTAGACTTTTTTTT
AGTAATTACTCTGACATTTGCTACTATAGTAACCAAGCACTCATTATATATGCATCCTCC
AAATGTTTTGTACTTATTTATAGGAAAATTGCACTAATGAGATTAATAATGTGAAATGCA
GTTTTCTTGCAAAATTAGCATTAGAGAATTGATTTTAGAAGACAGATCTTTAAGGTACAA
AAGTGCAATAAAATAGTAAACTATAGGAATATAGATAGCAAGAAAATAATAAAAGTGGAC
TTGTTTATAGTAAATATTGTAACCAACCATTTTTATTAACTATATCTATATCTCATTAAG
GGAAAGTTTATATGTTTTGTTATTAATATTTTGTTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               257-405, - strand, RNAz p=0.999692
               

               
               699-853, + strand, RNAz p=0.993756

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               257-405, - strand, RNAz p=0.999692
               

               
               699-853, + strand, RNAz p=0.993756

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               796-867, + strand, RNAmicro p=0.948112

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               796-867, + strand, RNAmicro p=0.948112

Similar Transcript(s): 1 entry(ies)

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Similar Transcript(s): 1 entry(ies)

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               282-401, LB02537.CR_C10 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|EE341569.1|), 
blast E-value=2e-16, identity=85%

Similar Transcript(s): 1 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               282-401, LB02537.CR_C10 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|EE341569.1|), 
blast E-value=2e-16, identity=85%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_018003, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_018003, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               217-984, gnl|bosTau2|chr10 (12624719-12623936)
               

               
               217-984, gnl|Hg17|chr15 (68736125-68735327)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               217-984, gnl|bosTau2|chr10 (12624719-12623936)
               

               
               217-984, gnl|Hg17|chr15 (68736125-68735327)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               ret (0.3862)
               

               
               tra (0.246184)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               kid (0.129735)
               

               
               eru (0.120048)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.3862)
               

               
               tra (0.246184)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               kid (0.129735)
               

               
               eru (0.120048)

	257-405, - strand, RNAz p=0.999692
	699-853, + strand, RNAz p=0.993756

	217-984, gnl\|bosTau2\|chr10 (12624719-12623936)
	217-984, gnl\|Hg17\|chr15 (68736125-68735327)

	ret (0.3862)
	tra (0.246184)
	eye (0.170503)
	cut (0.169924)
	fco (0.157208)
	lun (0.150489)
	kid (0.129735)
	eru (0.120048)