Non-Coding RNA Search

Ss1.1-rtra04_f16.5

Sequence:


               
               TTTTCCAAAATGGCCTGGCAGTTTGAGAATTAATGCTATAACCACTCTGAAATTCATAAC
ATTTGGTGTGTTTAATTAATAATAGTATATCAATAAATATTTTAAGACTATGGGTTCATA
GACAGAGAGTGGGAAGCATTAATGAAATATGTGTGGAAAAGCCTGGTTTATTTAGAGAGC
ACTTCAGTTGTCTTCTACATGGTTTAAGGGTGAATGTTCCCCCAATTTTTTTTTAAGAGG
AAGACATACATTTGAATGTGATCATCTAATTTCTACAACACTGGACTACTAGGAATAACT
TTTTAAAAATTACTGTTCTGTATAAATAAACTCTGTAATTCAAGTACAAAGAAACACCTG
ATACAAAAAGCATTCTTTTGGCCATGACACAAGTGCACTGTGGCAGTGCCGTTTGCTCAG
GACCCAACTCTGCAGCCCTTCTGTGTGTGCTCCTCTGCGTTGTTTTGCTGTTAATACACA
CACAGGCCTTCCTCTCTTGTCCCTAGAAAAGCTGGGCTTCCAAAGCACTGTTGAACACTG
AGGATACTGTTGTTAATGTGGATGTTTGATGAGTCGTATTTTAAATATCAAAGATTATTA
AATAAAGATCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTCCAAAATGGCCTGGCAGTTTGAGAATTAATGCTATAACCACTCTGAAATTCATAAC
ATTTGGTGTGTTTAATTAATAATAGTATATCAATAAATATTTTAAGACTATGGGTTCATA
GACAGAGAGTGGGAAGCATTAATGAAATATGTGTGGAAAAGCCTGGTTTATTTAGAGAGC
ACTTCAGTTGTCTTCTACATGGTTTAAGGGTGAATGTTCCCCCAATTTTTTTTTAAGAGG
AAGACATACATTTGAATGTGATCATCTAATTTCTACAACACTGGACTACTAGGAATAACT
TTTTAAAAATTACTGTTCTGTATAAATAAACTCTGTAATTCAAGTACAAAGAAACACCTG
ATACAAAAAGCATTCTTTTGGCCATGACACAAGTGCACTGTGGCAGTGCCGTTTGCTCAG
GACCCAACTCTGCAGCCCTTCTGTGTGTGCTCCTCTGCGTTGTTTTGCTGTTAATACACA
CACAGGCCTTCCTCTCTTGTCCCTAGAAAAGCTGGGCTTCCAAAGCACTGTTGAACACTG
AGGATACTGTTGTTAATGTGGATGTTTGATGAGTCGTATTTTAAATATCAAAGATTATTA
AATAAAGATCAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               403-518, - strand, RNAz p=0.985547

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               403-518, - strand, RNAz p=0.985547

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-612, gnl|bosTau2|chr21 (36499166-36498563)
               

               
               1-612, gnl|Hg17|chr14 (91595285-91594662)
               

               
               1-612, gnl|Mm7|chr12 (99414848-99414266)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-612, gnl|bosTau2|chr21 (36499166-36498563)
               

               
               1-612, gnl|Hg17|chr14 (91595285-91594662)
               

               
               1-612, gnl|Mm7|chr12 (99414848-99414266)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               aor (0.195274)
               

               
               eli (0.151814)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)
               

               
               eli (0.151814)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

	1-612, gnl\|bosTau2\|chr21 (36499166-36498563)
	1-612, gnl\|Hg17\|chr14 (91595285-91594662)
	1-612, gnl\|Mm7\|chr12 (99414848-99414266)

	aor (0.195274)
	eli (0.151814)
	tra (0.123092)
	med (0.116252)
	ecc (0.115035)
	spc (0.113366)