Non-Coding RNA Search

Ss1.1-rtra04_n22.5

Sequence:


               
               AGACTCTGCTCTTGTTTGTGGTTTTAGCATCTTATATCTTTGAGGATATTTGTGATAATT
TCTTTTTTTCTTCAGTAATGGATTGCCTCCAAAGTTGTTCTTTCCTTTCTTTTTTTTGAT
CTCAATCATGTTAGAGATATTTTTTTCAGATGTCTGTTTGTTCTTGGTTGTGTTTTTTAT
GGTATTATTATACGGGAGCTCCCAAATTGCTTCTATAAAATGCTTCCTGACTATTCTGTT
TATTATTTTTTCATAATCTTTCTTGGAGGGGCTAGTTTAAGTTGAAATTGGGGAGGATTA
TCTGGATAAATTTTTACTCCCCTGTGAAGACAGGAGGGTTTTGTACTCTGTGTAGTTTTC
CTCACCAGGATTGGTGGGCAGTAGCACATTTGTTGTAATAAAATGTGAGGCAGAGGAGAT
GTGAGCTGCTGAGAAGGGAAAATTTAGGGATTTCTGAGATCAGAACACATCTTCTCTTAG
CCAACCCTTAAATGTTCTTTTATTTTGCAGTATGTATATTTTATCCTGGTAAACTAATAC
CAAGGGTAGTACTGCCAGAGAAAATATAGGACTCTCGGTTACATTTAAATTTCAGATAGA
CAACAAATCAGGTTTTAGTATCAATATGTTCCAAATATTGCATGGGACATAATGCTACTA
AAAATGACTGCTTTCCTGAAATTCAAAATAACCGGGAGTAAACAGCCTTACAGTCTCTGT
GGGGGATTGGTTCTAGGATCCCCCATGGGTACCAAAACCTGTGGATGCTCAATCCTTTAT
ATGAAGTGGTGTATTGTTTGAAGATAACCTATGCACATCCTCCCTATACTTTAAGTCATC
TCTAGATTAGTTGTAATACCTAATACAATGTAAATTGCTATGTAAATAGTTGCAAATAAA
ATGTAAATGCTATGTAAATAGTTGCTGGGTGTGGAGCAAATTCAGTTTTGCATTTTGGAA
CTTTCTGAAGTTTTTATTTTTTCTTTTCAAATTTTGCTTGAACCTGTGGATGTGGAACCC
ATGGATAGGAGTGCCAACTATATTGTATTTTTTAATTAAAGTTATATTTTGAGATCATTG
TAAATTCACATGCAGTTTTATGAAATATCACGGAGCTTTCCTGTACCCTTCACCCAGTTT
CCTCGAGTGGTAACATCTTGCCAAACTTTACTGCAATGTCACAACCAGGATTGACATCAA
TACAGCCAAGATAAAGAGCAGTTCCATCACCACAACTCTTCCTCCTGTTGACCTTTCACA
GCCACGTCTGCTTCTCCTTTCCCACCAGACTAAACCCCTGGCGACCACTAATCTGTTCTC
CTTTTCTAAACTTTGTCATTTTGAGAATGTTATATAAATAAAATTGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGACTCTGCTCTTGTTTGTGGTTTTAGCATCTTATATCTTTGAGGATATTTGTGATAATT
TCTTTTTTTCTTCAGTAATGGATTGCCTCCAAAGTTGTTCTTTCCTTTCTTTTTTTTGAT
CTCAATCATGTTAGAGATATTTTTTTCAGATGTCTGTTTGTTCTTGGTTGTGTTTTTTAT
GGTATTATTATACGGGAGCTCCCAAATTGCTTCTATAAAATGCTTCCTGACTATTCTGTT
TATTATTTTTTCATAATCTTTCTTGGAGGGGCTAGTTTAAGTTGAAATTGGGGAGGATTA
TCTGGATAAATTTTTACTCCCCTGTGAAGACAGGAGGGTTTTGTACTCTGTGTAGTTTTC
CTCACCAGGATTGGTGGGCAGTAGCACATTTGTTGTAATAAAATGTGAGGCAGAGGAGAT
GTGAGCTGCTGAGAAGGGAAAATTTAGGGATTTCTGAGATCAGAACACATCTTCTCTTAG
CCAACCCTTAAATGTTCTTTTATTTTGCAGTATGTATATTTTATCCTGGTAAACTAATAC
CAAGGGTAGTACTGCCAGAGAAAATATAGGACTCTCGGTTACATTTAAATTTCAGATAGA
CAACAAATCAGGTTTTAGTATCAATATGTTCCAAATATTGCATGGGACATAATGCTACTA
AAAATGACTGCTTTCCTGAAATTCAAAATAACCGGGAGTAAACAGCCTTACAGTCTCTGT
GGGGGATTGGTTCTAGGATCCCCCATGGGTACCAAAACCTGTGGATGCTCAATCCTTTAT
ATGAAGTGGTGTATTGTTTGAAGATAACCTATGCACATCCTCCCTATACTTTAAGTCATC
TCTAGATTAGTTGTAATACCTAATACAATGTAAATTGCTATGTAAATAGTTGCAAATAAA
ATGTAAATGCTATGTAAATAGTTGCTGGGTGTGGAGCAAATTCAGTTTTGCATTTTGGAA
CTTTCTGAAGTTTTTATTTTTTCTTTTCAAATTTTGCTTGAACCTGTGGATGTGGAACCC
ATGGATAGGAGTGCCAACTATATTGTATTTTTTAATTAAAGTTATATTTTGAGATCATTG
TAAATTCACATGCAGTTTTATGAAATATCACGGAGCTTTCCTGTACCCTTCACCCAGTTT
CCTCGAGTGGTAACATCTTGCCAAACTTTACTGCAATGTCACAACCAGGATTGACATCAA
TACAGCCAAGATAAAGAGCAGTTCCATCACCACAACTCTTCCTCCTGTTGACCTTTCACA
GCCACGTCTGCTTCTCCTTTCCCACCAGACTAAACCCCTGGCGACCACTAATCTGTTCTC
CTTTTCTAAACTTTGTCATTTTGAGAATGTTATATAAATAAAATTGTA

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               703-1047, gnl|bosTau2|chr1 (36275421-36275060)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               703-1047, gnl|bosTau2|chr1 (36275421-36275060)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               bla (0.248694)
               

               
               tra (0.246184)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.248694)
               

               
               tra (0.246184)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)

	bla (0.248694)
	tra (0.246184)
	spl (0.143184)
	csk (0.140746)
	lyg (0.133103)
	kid (0.129735)