Ss1.1-rtra04_n24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTAAAGAGGAGTTCCGGACCCTGAACATGGTGACGCCAACCCTGCGTGTGGAGGACTGCA GCATTGCACTCCTGCCCCGGAACCACGAGAAGAACCGCTGCATGGATATCCTGCCCCCCG ACCGCTGCCTGCCCTTCCTCATCACCATCGATGGCGAGAGCAGCAACTACATCAACGCCG CTCTCATGGATAGCTATAAACAGCCCTCGGCTTTCATAGTCAGCCAGCATCCTTTGCCAA ACACAGTGAAAGACTTCTGGAGACTGGTCCTGGATTATCACTGCACTTCTGTGGTTATGC TAAATGACGTGGATCCCGCCCAGTTGTGTCCGCAGTACTGGCCAGAAAACGGAGTCCACA GACACGGCCCCATCCAGGTGGAATTTGTCTCTGCCGATTTAGAGGAAGACATCATCAGCA GGATATTCCGTATTTACAATGCATCCCGGCCCCAGGATGGCTATCGGATGGTGCAGCAGT TCCAGTTCCTGGGCTGGCCAATGTACAGGGACACGCCGGTGTCCAAGCGCTCCTTCCTGA AGCTCATCCGCCAGGTGGACAAGTGGCAGGAGGAATACAACGGCGGGGAGGGCCGCACGG TCGTGCACTGCCTGAATGGGGGAGGCCGCAGTGGGACCTTCTGTGCCATCAGCATCGTCT GTGAGATGCTGCGACACCAGAGGACCGTGGACGTCTTCCACGCCGTGAAGACACTGAGAA ACAACAAGCCCAACATGGTGGATCTGCTGGACCAGTACAAGTTCTGCTATGAGGTAGCCC TGGAGTACTTGAATTCTGGCTGATGGTATACAGAGCCCCGCAGACAAGCCTTTCAGCCTG CAAAGCCAGAACGTGCCATGGGTATCTGTGCCGATGGGATAAAGACTTCTCAATACGCTT CTTTTGCTTTGCATAATCGGCTCTTCTGAAGAGCCCCAGAAAGTGTTTCTAAAACTGCTT GCACTGCCCGATTCCCAGTACTGCTGCCTGACGGAAACCCACCCAACAGCCTACAGTCAC CCAGTACCGTCCTCCTAGGCACCGGCTCCTCAGAGCAGTGTGGACAGCTGGTAAATTAAA GAGCACAATTATATTCTTATGAAGGAATTTGTACCTCTGGGGTATTATTTTGTGGCCCGT GAACCTTTGGTATTGTTACAGCTGAGTGTACATTTTTGTTCTGTGGAGAATGCTACCTGG CATTATGATAATATATTATTTTAGTTAATATTTGTATTTTAACATGTTGCACAATATCAG CTTATGTAGCTTTCCAAGACTAACAGATAAAGTATAATGAACAAAGCTATGTTGTATGAG TTGTTGTTTCTATCAGATTTGTATTGTTTCCAAGGGAAAAGCTTGGGGAGGAGTTCGGTT CCAAAAAAGACAGAGATCAATGATCAGATTCACAGATGTGAAGCTTTTCCATTTGTGTAT ATTGTAAATAGTTTTGATTTCATCAAATTATTTATTCATTAAAAGAATTTTTGTGAAGCA CAGTGAGTGACAATCATTTTTATGAAGCCCTGGAAATTATTTACTGTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTAAAGAGGAGTTCCGGACCCTGAACATGGTGACGCCAACCCTGCGTGTGGAGGACTGCA GCATTGCACTCCTGCCCCGGAACCACGAGAAGAACCGCTGCATGGATATCCTGCCCCCCG ACCGCTGCCTGCCCTTCCTCATCACCATCGATGGCGAGAGCAGCAACTACATCAACGCCG CTCTCATGGATAGCTATAAACAGCCCTCGGCTTTCATAGTCAGCCAGCATCCTTTGCCAA ACACAGTGAAAGACTTCTGGAGACTGGTCCTGGATTATCACTGCACTTCTGTGGTTATGC TAAATGACGTGGATCCCGCCCAGTTGTGTCCGCAGTACTGGCCAGAAAACGGAGTCCACA GACACGGCCCCATCCAGGTGGAATTTGTCTCTGCCGATTTAGAGGAAGACATCATCAGCA GGATATTCCGTATTTACAATGCATCCCGGCCCCAGGATGGCTATCGGATGGTGCAGCAGT TCCAGTTCCTGGGCTGGCCAATGTACAGGGACACGCCGGTGTCCAAGCGCTCCTTCCTGA AGCTCATCCGCCAGGTGGACAAGTGGCAGGAGGAATACAACGGCGGGGAGGGCCGCACGG TCGTGCACTGCCTGAATGGGGGAGGCCGCAGTGGGACCTTCTGTGCCATCAGCATCGTCT GTGAGATGCTGCGACACCAGAGGACCGTGGACGTCTTCCACGCCGTGAAGACACTGAGAA ACAACAAGCCCAACATGGTGGATCTGCTGGACCAGTACAAGTTCTGCTATGAGGTAGCCC TGGAGTACTTGAATTCTGGCTGATGGTATACAGAGCCCCGCAGACAAGCCTTTCAGCCTG CAAAGCCAGAACGTGCCATGGGTATCTGTGCCGATGGGATAAAGACTTCTCAATACGCTT CTTTTGCTTTGCATAATCGGCTCTTCTGAAGAGCCCCAGAAAGTGTTTCTAAAACTGCTT GCACTGCCCGATTCCCAGTACTGCTGCCTGACGGAAACCCACCCAACAGCCTACAGTCAC CCAGTACCGTCCTCCTAGGCACCGGCTCCTCAGAGCAGTGTGGACAGCTGGTAAATTAAA GAGCACAATTATATTCTTATGAAGGAATTTGTACCTCTGGGGTATTATTTTGTGGCCCGT GAACCTTTGGTATTGTTACAGCTGAGTGTACATTTTTGTTCTGTGGAGAATGCTACCTGG CATTATGATAATATATTATTTTAGTTAATATTTGTATTTTAACATGTTGCACAATATCAG CTTATGTAGCTTTCCAAGACTAACAGATAAAGTATAATGAACAAAGCTATGTTGTATGAG TTGTTGTTTCTATCAGATTTGTATTGTTTCCAAGGGAAAAGCTTGGGGAGGAGTTCGGTT CCAAAAAAGACAGAGATCAATGATCAGATTCACAGATGTGAAGCTTTTCCATTTGTGTAT ATTGTAAATAGTTTTGATTTCATCAAATTATTTATTCATTAAAAGAATTTTTGTGAAGCA CAGTGAGTGACAATCATTTTTATGAAGCCCTGGAAATTATTTACTGTA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1094-1212, - strand, RNAz p=0.751831 | |
| 1253-1371, - strand, RNAz p=0.778038 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1094-1212, - strand, RNAz p=0.751831 | |
| 1253-1371, - strand, RNAz p=0.778038 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 14-190, gnl|bosTau2|chr24 (28406539-28406715) | |
| 14-190, gnl|canFam2|chr7 (77617981-77618170) | |
| 14-190, gnl|danRer3|chr20 (1900607-1900796) | |
| 14-190, gnl|dasNov1|scaffold_26693 (8656-8467) | |
| 14-190, gnl|echTel1|scaffold_319125 (109813-109634) | |
| 14-190, gnl|fr1|chrUn (99678203-99678391) | |
| 14-190, gnl|galGal2|chr2 (97381733-97381546) | |
| 14-190, gnl|hg17|chr18 (8369161-8369350) | |
| 14-190, gnl|Hg17|chr18 (8369161-8369337) | |
| 14-190, gnl|loxAfr1|scaffold_2051 (22292-22103) | |
| 14-190, gnl|mm7|chr17 (64962949-64962766) | |
| 14-190, gnl|Mm7|chr17 (64962947-64962771) | |
| 14-190, gnl|monDom2|scaffold_21 (24632473-24632286) | |
| 14-190, gnl|oryCun1|scaffold_80883 (10056-10237) | |
| 14-190, gnl|panTro1|chr17 (4316386-4316197) | |
| 14-190, gnl|rheMac2|chr18 (5974251-5974062) | |
| 14-190, gnl|rn3|chr9 (106017176-106016993) | |
| 14-190, gnl|tetNig1|chr15_random (1841734-1841550) | |
| 14-190, gnl|xenTro1|scaffold_333 (419867-420047) | |
| 449-614, gnl|bosTau2|chr24 (28413401-28413566) | |
| 449-614, gnl|canFam2|chr7 (77625220-77625419) | |
| 449-614, gnl|danRer3|chr20 (1909297-1909470) | |
| 449-614, gnl|dasNov1|scaffold_2817 (79997-80195) | |
| 449-614, gnl|echTel1|scaffold_319125 (93490-93288) | |
| 449-614, gnl|fr1|chrUn (99682156-99682348) | |
| 449-614, gnl|galGal2|chr2 (97374668-97374472) | |
| 449-614, gnl|hg17|chr18 (8377050-8377249) | |
| 449-614, gnl|Hg17|chr18 (8377069-8377234) | |
| 449-614, gnl|loxAfr1|scaffold_67632 (6216-6014) | |
| 449-614, gnl|mm7|chr17 (64956982-64956785) | |
| 449-614, gnl|Mm7|chr17 (64956961-64956796) | |
| 449-614, gnl|monDom2|scaffold_21 (24620564-24620363) | |
| 449-614, gnl|oryCun1|scaffold_198665 (455-253) | |
| 449-614, gnl|panTro1|chr17 (4308413-4308214) | |
| 449-614, gnl|rheMac2|chr10 (22359063-22359257) | |
| 449-614, gnl|rn3|chr9 (106011575-106011377) | |
| 449-614, gnl|tetNig1|chr15_random (1838223-1838052) | |
| 449-614, gnl|xenTro1|scaffold_333 (423760-423950) | |
| 749-1548, gnl|bosTau2|chr24 (28428994-28429805) | |
| 749-1548, gnl|Hg17|chr18 (8396106-8396905) | |
| 749-1548, gnl|Mm7|chr17 (64941108-64940327) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 14-190, gnl|bosTau2|chr24 (28406539-28406715) | |
| 14-190, gnl|canFam2|chr7 (77617981-77618170) | |
| 14-190, gnl|danRer3|chr20 (1900607-1900796) | |
| 14-190, gnl|dasNov1|scaffold_26693 (8656-8467) | |
| 14-190, gnl|echTel1|scaffold_319125 (109813-109634) | |
| 14-190, gnl|fr1|chrUn (99678203-99678391) | |
| 14-190, gnl|galGal2|chr2 (97381733-97381546) | |
| 14-190, gnl|hg17|chr18 (8369161-8369350) | |
| 14-190, gnl|Hg17|chr18 (8369161-8369337) | |
| 14-190, gnl|loxAfr1|scaffold_2051 (22292-22103) | |
| 14-190, gnl|mm7|chr17 (64962949-64962766) | |
| 14-190, gnl|Mm7|chr17 (64962947-64962771) | |
| 14-190, gnl|monDom2|scaffold_21 (24632473-24632286) | |
| 14-190, gnl|oryCun1|scaffold_80883 (10056-10237) | |
| 14-190, gnl|panTro1|chr17 (4316386-4316197) | |
| 14-190, gnl|rheMac2|chr18 (5974251-5974062) | |
| 14-190, gnl|rn3|chr9 (106017176-106016993) | |
| 14-190, gnl|tetNig1|chr15_random (1841734-1841550) | |
| 14-190, gnl|xenTro1|scaffold_333 (419867-420047) | |
| 449-614, gnl|bosTau2|chr24 (28413401-28413566) | |
| 449-614, gnl|canFam2|chr7 (77625220-77625419) | |
| 449-614, gnl|danRer3|chr20 (1909297-1909470) | |
| 449-614, gnl|dasNov1|scaffold_2817 (79997-80195) | |
| 449-614, gnl|echTel1|scaffold_319125 (93490-93288) | |
| 449-614, gnl|fr1|chrUn (99682156-99682348) | |
| 449-614, gnl|galGal2|chr2 (97374668-97374472) | |
| 449-614, gnl|hg17|chr18 (8377050-8377249) | |
| 449-614, gnl|Hg17|chr18 (8377069-8377234) | |
| 449-614, gnl|loxAfr1|scaffold_67632 (6216-6014) | |
| 449-614, gnl|mm7|chr17 (64956982-64956785) | |
| 449-614, gnl|Mm7|chr17 (64956961-64956796) | |
| 449-614, gnl|monDom2|scaffold_21 (24620564-24620363) | |
| 449-614, gnl|oryCun1|scaffold_198665 (455-253) | |
| 449-614, gnl|panTro1|chr17 (4308413-4308214) | |
| 449-614, gnl|rheMac2|chr10 (22359063-22359257) | |
| 449-614, gnl|rn3|chr9 (106011575-106011377) | |
| 449-614, gnl|tetNig1|chr15_random (1838223-1838052) | |
| 449-614, gnl|xenTro1|scaffold_333 (423760-423950) | |
| 749-1548, gnl|bosTau2|chr24 (28428994-28429805) | |
| 749-1548, gnl|Hg17|chr18 (8396106-8396905) | |
| 749-1548, gnl|Mm7|chr17 (64941108-64940327) |
| Expressed library(ies): 24 entry(ies) | More info |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
| lun (0.451467) | |
| cki (0.330469) | |
| isp (0.300752) | |
| bfe (0.299715) | |
| liv (0.292569) | |
| fce (0.271592) | |
| cbe (0.239234) | |
| fli (0.202881) | |
| sto (0.179824) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| cut (0.169924) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| che (0.136314) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| kid (0.129735) | |
| ova (0.129132) | |
| bla (0.124347) | |
| tra (0.123092) | |
| spc (0.113366) |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lun (0.451467) | |
| cki (0.330469) | |
| isp (0.300752) | |
| bfe (0.299715) | |
| liv (0.292569) | |
| fce (0.271592) | |
| cbe (0.239234) | |
| fli (0.202881) | |
| sto (0.179824) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| cut (0.169924) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| che (0.136314) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| kid (0.129735) | |
| ova (0.129132) | |
| bla (0.124347) | |
| tra (0.123092) | |
| spc (0.113366) |