Non-Coding RNA Search

Ss1.1-rtra05_c24.5

Sequence:


               
               GGCGTTGGTCTGAGTGGCTCAAGTATGGACTGTGAGTCTGGGAGAAAACCTCCCCACTCC
TCTTCATTCACTCCAGCCTGTACACTTCCTGCTTTTAATGGAAATGTGTTGAAAACAGGT
GCTTCTCAAAAGCAGCTTGGCCCCAGCCAGAATTGTGTCCTTTTTTCCCTTCTTGACCCA
ATAGGCATGCGGATTTACTTTTCCAGGAGAGAGGATAGATTTGTATTTCTAGCCATACTC
TCAGGTCCTCTGTATGATGTTTGTGAAAGAAATTAGAGCTGTGTAGTGTGCCATGAAACA
GTAAAACCACCTACCTTGGAACTGTTAATGTGGGGGGAGTGGGTATAGAGTTAGAGGTAA
TCATAAGGGCCGGTGACATTTGTACCTCAGTCTACCAAAAGTGTAGCAGTAAGTTTAGCT
TGCTAAGCATTTCCTAGAAGCAAGTGCTTCTAATTTTTGAGCATTCTCACAAGTGGAGCC
ATGCACATAATTGGACAGAGATGTGAAAATGGGTGGCTTCCTTCTGGTAAGAGGAGCAAT
GGACCATGTTGCTTATATATCACTCTAGTAGGGGATGTCATTTTCCCTTCCAAGCAAGGG
AAATAGCAGTGCTAAATAGTTTTGTAATTTTTTGAATGAGAAACTTTTAGGTAAAGATAA
ACTGTCAGATAATATTTTTCAGATGCATTTACATTGACTCTGGGGAAAAGATTGTGAAAA
AAGTTGCAGTCATGGTTTTCTTTTGTTTTGCTTTTAATTTTAAAGACTTGAGAAATTCTG
TTACATGAGGTGACAATATAAAAACATATTTAGTTTTATACTAAGTCTTTTTTTAAGGTC
TTGGCATTTAATATAAAAGCAAATCCACACATTTTCTAACTTTCCACAAGTTCCAAAAAG
GGAAGGAAATTTTGGTTTTTAAAAATCATGACACTGTTTTACCATGAAATTGAGTAGCTA
ACTTTTGGTAACACCTTTTGTTTATTTGTATGTTTGTAATAATGGACATTTTAAAACACA
GGAATGTTTTGGTTTGTACAGACTTTGACAATTGTGTGTTAATAAAAATTGATATTGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGTTGGTCTGAGTGGCTCAAGTATGGACTGTGAGTCTGGGAGAAAACCTCCCCACTCC
TCTTCATTCACTCCAGCCTGTACACTTCCTGCTTTTAATGGAAATGTGTTGAAAACAGGT
GCTTCTCAAAAGCAGCTTGGCCCCAGCCAGAATTGTGTCCTTTTTTCCCTTCTTGACCCA
ATAGGCATGCGGATTTACTTTTCCAGGAGAGAGGATAGATTTGTATTTCTAGCCATACTC
TCAGGTCCTCTGTATGATGTTTGTGAAAGAAATTAGAGCTGTGTAGTGTGCCATGAAACA
GTAAAACCACCTACCTTGGAACTGTTAATGTGGGGGGAGTGGGTATAGAGTTAGAGGTAA
TCATAAGGGCCGGTGACATTTGTACCTCAGTCTACCAAAAGTGTAGCAGTAAGTTTAGCT
TGCTAAGCATTTCCTAGAAGCAAGTGCTTCTAATTTTTGAGCATTCTCACAAGTGGAGCC
ATGCACATAATTGGACAGAGATGTGAAAATGGGTGGCTTCCTTCTGGTAAGAGGAGCAAT
GGACCATGTTGCTTATATATCACTCTAGTAGGGGATGTCATTTTCCCTTCCAAGCAAGGG
AAATAGCAGTGCTAAATAGTTTTGTAATTTTTTGAATGAGAAACTTTTAGGTAAAGATAA
ACTGTCAGATAATATTTTTCAGATGCATTTACATTGACTCTGGGGAAAAGATTGTGAAAA
AAGTTGCAGTCATGGTTTTCTTTTGTTTTGCTTTTAATTTTAAAGACTTGAGAAATTCTG
TTACATGAGGTGACAATATAAAAACATATTTAGTTTTATACTAAGTCTTTTTTTAAGGTC
TTGGCATTTAATATAAAAGCAAATCCACACATTTTCTAACTTTCCACAAGTTCCAAAAAG
GGAAGGAAATTTTGGTTTTTAAAAATCATGACACTGTTTTACCATGAAATTGAGTAGCTA
ACTTTTGGTAACACCTTTTGTTTATTTGTATGTTTGTAATAATGGACATTTTAAAACACA
GGAATGTTTTGGTTTGTACAGACTTTGACAATTGTGTGTTAATAAAAATTGATATTGACT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               50-1080, gnl|bosTau2|chr2 (75922003-75923043)
               

               
               50-1080, gnl|Hg17|chr1 (27772729-27773766)
               

               
               50-1080, gnl|Mm7|chr4 (132278548-132277650)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               50-1080, gnl|bosTau2|chr2 (75922003-75923043)
               

               
               50-1080, gnl|Hg17|chr1 (27772729-27773766)
               

               
               50-1080, gnl|Mm7|chr4 (132278548-132277650)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               ski (0.440205)
               

               
               bfe (0.299715)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               tbr (0.154178)
               

               
               thg (0.126791)
               

               
               clu (0.119646)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.440205)
               

               
               bfe (0.299715)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               tbr (0.154178)
               

               
               thg (0.126791)
               

               
               clu (0.119646)

	50-1080, gnl\|bosTau2\|chr2 (75922003-75923043)
	50-1080, gnl\|Hg17\|chr1 (27772729-27773766)
	50-1080, gnl\|Mm7\|chr4 (132278548-132277650)

	ski (0.440205)
	bfe (0.299715)
	fce (0.271592)
	pla (0.267344)
	tra (0.246184)
	mgp (0.230681)
	tbr (0.154178)
	thg (0.126791)
	clu (0.119646)