Non-Coding RNA Search

Ss1.1-rtra05_d10.5

Sequence:


               
               TTTCCCCCATGCAAAATTGTTGACCTGGAAGCTGTGAAAGTAGAAGAGGAGGTGGCTTTA
TCTTGGACTGCACCTGGAGAAGACTTTGATCAGGGCCAGGCTAAAAGCTATGAAATAAGA
ATAAGTAAAAGTCTGCAGAATATTCAAGATGACTTCAACAGTGCCATTTTAGTGAATTCA
TCAAAGCTAAAGCCTCAGCAGGCTGGTACCAAGGAGACGTTTACATTCTCACCTGAGCTT
TTCACAAATGGACCTGAACATCAAGCTGATGGAGAGACACAAAGAAGCCACCGAATTTAC
GTGGCAATACGAGCGGTAGATAGGAACTCCTTAAGGTCTGCTGTATCTAACGTTGCCCAG
GCATCTCTGTCAGTTCCCCCAAATTCTACTCCTGTCCTTGCTAGAGATGATCTTATATTG
AAAGGGGTTTTGACAGCAATAAGTTTTATAGGAGTCATCTGCCTCACTATAGTTATCATA
CATTGTACTTTAAACAGGAAAAAGAGAGCAGATAAGAGAGGGAATGAAACAAAATTACTA
TAAACAAATGTACAGAGTACTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCCCCCATGCAAAATTGTTGACCTGGAAGCTGTGAAAGTAGAAGAGGAGGTGGCTTTA
TCTTGGACTGCACCTGGAGAAGACTTTGATCAGGGCCAGGCTAAAAGCTATGAAATAAGA
ATAAGTAAAAGTCTGCAGAATATTCAAGATGACTTCAACAGTGCCATTTTAGTGAATTCA
TCAAAGCTAAAGCCTCAGCAGGCTGGTACCAAGGAGACGTTTACATTCTCACCTGAGCTT
TTCACAAATGGACCTGAACATCAAGCTGATGGAGAGACACAAAGAAGCCACCGAATTTAC
GTGGCAATACGAGCGGTAGATAGGAACTCCTTAAGGTCTGCTGTATCTAACGTTGCCCAG
GCATCTCTGTCAGTTCCCCCAAATTCTACTCCTGTCCTTGCTAGAGATGATCTTATATTG
AAAGGGGTTTTGACAGCAATAAGTTTTATAGGAGTCATCTGCCTCACTATAGTTATCATA
CATTGTACTTTAAACAGGAAAAAGAGAGCAGATAAGAGAGGGAATGAAACAAAATTACTA
TAAACAAATGTACAGAGTACTTTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61854189|ref|XP_605456.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61854189|ref|XP_605456.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               100-564, gnl|bosTau2|chr3 (42306984-42307447)
               

               
               100-564, gnl|Hg17|chr1 (86632788-86633252)
               

               
               100-564, gnl|Mm7|chr3 (144965179-144964715)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               100-564, gnl|bosTau2|chr3 (42306984-42307447)
               

               
               100-564, gnl|Hg17|chr1 (86632788-86633252)
               

               
               100-564, gnl|Mm7|chr3 (144965179-144964715)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               lyg (0.399308)
               

               
               mgp (0.230681)
               

               
               mgm (0.180343)
               

               
               csk (0.140746)
               

               
               ret (0.128733)
               

               
               tra (0.123092)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (0.399308)
               

               
               mgp (0.230681)
               

               
               mgm (0.180343)
               

               
               csk (0.140746)
               

               
               ret (0.128733)
               

               
               tra (0.123092)

	100-564, gnl\|bosTau2\|chr3 (42306984-42307447)
	100-564, gnl\|Hg17\|chr1 (86632788-86633252)
	100-564, gnl\|Mm7\|chr3 (144965179-144964715)

	lyg (0.399308)
	mgp (0.230681)
	mgm (0.180343)
	csk (0.140746)
	ret (0.128733)
	tra (0.123092)