Ss1.1-rtra05_f22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACATATACTCCCTCAGGGTCGCTGTAATTGGTTCAACCCCATACCAAAAAGTGAGGAGG AAGAAGAAGAAGATGAAGAAGAAAAGGAAGAAAAAGGAGAAGAGCCTGACTATATAGAAC AGGAAGTGGGACCTCCTCTCTTGACACCAATCTCTGAAGATTTAGAGATCCAAAATATAC CGCCTTGGACAACACGGTTATCCTCAAATCTAATTCCTCAATATGCTATTGCAGTCCTTA GATCCAACCTTTGGCCTGGAGCATATGCCTTTTCCAATGGCAAAAAGTTTGAAAACCTCT ACATAGGGTGGGGTCATAAATACAGTCCAGACAGCTATACACCTCCAGTTCCACCACCAG TTTATCAAGAGTATCCTAGTGGACCAGAAATTACAGAAATGGATGACCCTAGTGTGGAAG AGGAGCAGGCTTTCAGGGCTGCACAAGAAGTAGCTGTAAACCTCACCGAAGAAAATGAAG AAACTGAGGAGGATGAAGATGAGGAAGATGATTATGACCAATAAAAATAAAATTAGTTCA GTCTTATGTGAGAGACTGATATACACAACATCTTATTTGAAAGTGATTTTATATACATAC ATGTGACAACTATTCATGCACAAAATACCATTCCTTGAAAACATAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACATATACTCCCTCAGGGTCGCTGTAATTGGTTCAACCCCATACCAAAAAGTGAGGAGG AAGAAGAAGAAGATGAAGAAGAAAAGGAAGAAAAAGGAGAAGAGCCTGACTATATAGAAC AGGAAGTGGGACCTCCTCTCTTGACACCAATCTCTGAAGATTTAGAGATCCAAAATATAC CGCCTTGGACAACACGGTTATCCTCAAATCTAATTCCTCAATATGCTATTGCAGTCCTTA GATCCAACCTTTGGCCTGGAGCATATGCCTTTTCCAATGGCAAAAAGTTTGAAAACCTCT ACATAGGGTGGGGTCATAAATACAGTCCAGACAGCTATACACCTCCAGTTCCACCACCAG TTTATCAAGAGTATCCTAGTGGACCAGAAATTACAGAAATGGATGACCCTAGTGTGGAAG AGGAGCAGGCTTTCAGGGCTGCACAAGAAGTAGCTGTAAACCTCACCGAAGAAAATGAAG AAACTGAGGAGGATGAAGATGAGGAAGATGATTATGACCAATAAAAATAAAATTAGTTCA GTCTTATGTGAGAGACTGATATACACAACATCTTATTTGAAAGTGATTTTATATACATAC ATGTGACAACTATTCATGCACAAAATACCATTCCTTGAAAACATAAAA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 49-165, - strand, RNAz p=0.977731 | |
| 471-607, + strand, RNAz p=0.885107 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 49-165, - strand, RNAz p=0.977731 | |
| 471-607, + strand, RNAz p=0.885107 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 16-165, gnl|bosTau2|chr9 (17010362-17010514) | |
| 16-165, gnl|Hg17|chr6 (117057421-117057558) | |
| 16-165, gnl|Mm7|chr10 (33692148-33692294) | |
| 270-647, gnl|bosTau2|chr9 (17014118-17014489) | |
| 270-647, gnl|canFam2|chr1 (60126927-60127184) | |
| 270-647, gnl|danRer3|chr5 (68491372-68491619) | |
| 270-647, gnl|dasNov1|scaffold_76459 (5269-5015) | |
| 270-647, gnl|echTel1|scaffold_290254 (77747-77995) | |
| 270-647, gnl|fr1|chrUn (291820849-291821114) | |
| 270-647, gnl|galGal2|chr4 (61534766-61534475) | |
| 270-647, gnl|hg17|chr6 (117060046-117060302) | |
| 270-647, gnl|Hg17|chr6 (117060049-117060446) | |
| 270-647, gnl|loxAfr1|scaffold_39872 (14222-14479) | |
| 270-647, gnl|mm7|chr10 (33694960-33695213) | |
| 270-647, gnl|Mm7|chr10 (33694966-33695311) | |
| 270-647, gnl|monDom2|scaffold_0 (100896518-100896249) | |
| 270-647, gnl|panTro1|chr5_random (4158789-4158525) | |
| 270-647, gnl|rheMac2|chr4 (147304748-147304489) | |
| 270-647, gnl|rn3|chr20 (30104923-30105168) | |
| 270-647, gnl|tetNig1|chrUn_random (49780642-49780886) | |
| 270-647, gnl|xenTro1|scaffold_105 (561557-561306) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 16-165, gnl|bosTau2|chr9 (17010362-17010514) | |
| 16-165, gnl|Hg17|chr6 (117057421-117057558) | |
| 16-165, gnl|Mm7|chr10 (33692148-33692294) | |
| 270-647, gnl|bosTau2|chr9 (17014118-17014489) | |
| 270-647, gnl|canFam2|chr1 (60126927-60127184) | |
| 270-647, gnl|danRer3|chr5 (68491372-68491619) | |
| 270-647, gnl|dasNov1|scaffold_76459 (5269-5015) | |
| 270-647, gnl|echTel1|scaffold_290254 (77747-77995) | |
| 270-647, gnl|fr1|chrUn (291820849-291821114) | |
| 270-647, gnl|galGal2|chr4 (61534766-61534475) | |
| 270-647, gnl|hg17|chr6 (117060046-117060302) | |
| 270-647, gnl|Hg17|chr6 (117060049-117060446) | |
| 270-647, gnl|loxAfr1|scaffold_39872 (14222-14479) | |
| 270-647, gnl|mm7|chr10 (33694960-33695213) | |
| 270-647, gnl|Mm7|chr10 (33694966-33695311) | |
| 270-647, gnl|monDom2|scaffold_0 (100896518-100896249) | |
| 270-647, gnl|panTro1|chr5_random (4158789-4158525) | |
| 270-647, gnl|rheMac2|chr4 (147304748-147304489) | |
| 270-647, gnl|rn3|chr20 (30104923-30105168) | |
| 270-647, gnl|tetNig1|chrUn_random (49780642-49780886) | |
| 270-647, gnl|xenTro1|scaffold_105 (561557-561306) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ova (0.129132) | |
| tra (0.123092) |