Ss1.1-rtra05_h24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTTTTTTTTTTTAATTCTTTTTTTTTTCCTTCTTTTCTCTTTTTTTCCTCTC TCTCCTCCTAATACACACTTTTTTTAGTAAGGGGAATACCATGATGTCGCTCTAGCCCGG CCCCTGTAGACACGACCCCGGGGCCTGCTGTTAAAACCACTGTAGAATCGAGAGCGGGAA CTGTTGTAGTTGGTGGTCCGGGCACGGTATCGAGCTCGTGGAAAACCCCGGTCTGTTGTG CTGATGCCTGGTCTGTTGGTTCGTTTTGGGATCACCTTGATTTGTCTTCCTCTAAATAGG GACTCATCTAAGGCCAAGGAAGTCCTCACTGACTCTTTGTCTGAGAACTCTATATATGCA AACCCTTTGGGATGGCCACTAAATTTGTCACAGAGTATAGTAACGCGGTTGACTGAACCA CAGCCATGAAAGTGTGCTTCCAGCTCTTCTGCTGTTGCACCATAGTCCACATTGCCAACA TAGATAGATCGGGCATCTGCCTCCATCTTCTCCTCAATGGACATGATAACTGGGCCAGCA TTGCCTGGTGGTGGACTCATATTCATCTGCTTCTCTACTTCGTTCTGTAGCTCCTTTAGC TTCTCAGCTTCTTCCTCCATCTCCCTGACTCGAGCTTTGATCGCTTCCAGCTCCGGGTCC TCAATGGCGCCGTCCCCCGGGTCACCCTCGACCAGTCCCGGCTCCTCCTCCTCCTCCTGG CTGCCGGGGGCTCCCGAGCCAGGCCCAGGGCCCGGAGCTCCTGGGGGGGCGCGGGGCCGG GGCGGCTCCTCTTCGGGCTCGGGCTCCGGCTCGGGCTCCAGCAGCAGCTCCTCAGGCTCC AGCTCCTCAGACTCCAAGCCGTTCCCGTAGTCCCCTGCGCCCCCCGGGGCCCCCTCCCCG GCCTCCCCACCGGCCCCGGGCACAAGATGGCGCCGCCGCCCCGGCCCGGAGCCCCGACCG CCCGCAGCCCCCGCTGCTGCTGCCGCCGCCGCCGCCGCCGCCATCGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTTTTTTTTTTTAATTCTTTTTTTTTTCCTTCTTTTCTCTTTTTTTCCTCTC TCTCCTCCTAATACACACTTTTTTTAGTAAGGGGAATACCATGATGTCGCTCTAGCCCGG CCCCTGTAGACACGACCCCGGGGCCTGCTGTTAAAACCACTGTAGAATCGAGAGCGGGAA CTGTTGTAGTTGGTGGTCCGGGCACGGTATCGAGCTCGTGGAAAACCCCGGTCTGTTGTG CTGATGCCTGGTCTGTTGGTTCGTTTTGGGATCACCTTGATTTGTCTTCCTCTAAATAGG GACTCATCTAAGGCCAAGGAAGTCCTCACTGACTCTTTGTCTGAGAACTCTATATATGCA AACCCTTTGGGATGGCCACTAAATTTGTCACAGAGTATAGTAACGCGGTTGACTGAACCA CAGCCATGAAAGTGTGCTTCCAGCTCTTCTGCTGTTGCACCATAGTCCACATTGCCAACA TAGATAGATCGGGCATCTGCCTCCATCTTCTCCTCAATGGACATGATAACTGGGCCAGCA TTGCCTGGTGGTGGACTCATATTCATCTGCTTCTCTACTTCGTTCTGTAGCTCCTTTAGC TTCTCAGCTTCTTCCTCCATCTCCCTGACTCGAGCTTTGATCGCTTCCAGCTCCGGGTCC TCAATGGCGCCGTCCCCCGGGTCACCCTCGACCAGTCCCGGCTCCTCCTCCTCCTCCTGG CTGCCGGGGGCTCCCGAGCCAGGCCCAGGGCCCGGAGCTCCTGGGGGGGCGCGGGGCCGG GGCGGCTCCTCTTCGGGCTCGGGCTCCGGCTCGGGCTCCAGCAGCAGCTCCTCAGGCTCC AGCTCCTCAGACTCCAAGCCGTTCCCGTAGTCCCCTGCGCCCCCCGGGGCCCCCTCCCCG GCCTCCCCACCGGCCCCGGGCACAAGATGGCGCCGCCGCCCCGGCCCGGAGCCCCGACCG CCCGCAGCCCCCGCTGCTGCTGCCGCCGCCGCCGCCGCCGCCATCGCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 645-763, - strand, RNAz p=0.852052 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 645-763, - strand, RNAz p=0.852052 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 123-277, gnl|bosTau2|chr10 (13795418-13795572) | |
| 123-277, gnl|Hg17|chr14 (22863339-22863185) | |
| 123-277, gnl|Mm7|chr14 (49764207-49764053) | |
| 362-470, gnl|bosTau2|chr10 (13796206-13796314) | |
| 362-470, gnl|canFam2|chr8 (6586360-6586472) | |
| 362-470, gnl|danRer3|chr24 (14632244-14632358) | |
| 362-470, gnl|dasNov1|scaffold_85379 (3459-3357) | |
| 362-470, gnl|echTel1|scaffold_200117 (4617-4508) | |
| 362-470, gnl|fr1|chrUn (47730263-47730149) | |
| 362-470, gnl|hg17|chr14 (22862427-22862541) | |
| 362-470, gnl|Hg17|chr14 (22862534-22862426) | |
| 362-470, gnl|loxAfr1|scaffold_62460 (1098-1210) | |
| 362-470, gnl|mm7|chr14 (49762752-49762864) | |
| 362-470, gnl|Mm7|chr14 (49762859-49762751) | |
| 362-470, gnl|monDom2|scaffold_12 (26400779-26400665) | |
| 362-470, gnl|oryCun1|scaffold_83064 (1223-1111) | |
| 362-470, gnl|panTro1|chr15 (21834901-21835015) | |
| 362-470, gnl|rheMac2|chr7 (86163496-86163610) | |
| 362-470, gnl|rn3|chr15 (33011842-33011954) | |
| 362-470, gnl|tetNig1|chrUn_random (52795523-52795409) | |
| 362-470, gnl|xenTro1|scaffold_53 (155646-155535) | |
| 645-773, gnl|bosTau2|chr10 (13798023-13798151) | |
| 645-773, gnl|Hg17|chr14 (22860878-22860750) | |
| 645-773, gnl|Mm7|chr14 (49761437-49761309) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 123-277, gnl|bosTau2|chr10 (13795418-13795572) | |
| 123-277, gnl|Hg17|chr14 (22863339-22863185) | |
| 123-277, gnl|Mm7|chr14 (49764207-49764053) | |
| 362-470, gnl|bosTau2|chr10 (13796206-13796314) | |
| 362-470, gnl|canFam2|chr8 (6586360-6586472) | |
| 362-470, gnl|danRer3|chr24 (14632244-14632358) | |
| 362-470, gnl|dasNov1|scaffold_85379 (3459-3357) | |
| 362-470, gnl|echTel1|scaffold_200117 (4617-4508) | |
| 362-470, gnl|fr1|chrUn (47730263-47730149) | |
| 362-470, gnl|hg17|chr14 (22862427-22862541) | |
| 362-470, gnl|Hg17|chr14 (22862534-22862426) | |
| 362-470, gnl|loxAfr1|scaffold_62460 (1098-1210) | |
| 362-470, gnl|mm7|chr14 (49762752-49762864) | |
| 362-470, gnl|Mm7|chr14 (49762859-49762751) | |
| 362-470, gnl|monDom2|scaffold_12 (26400779-26400665) | |
| 362-470, gnl|oryCun1|scaffold_83064 (1223-1111) | |
| 362-470, gnl|panTro1|chr15 (21834901-21835015) | |
| 362-470, gnl|rheMac2|chr7 (86163496-86163610) | |
| 362-470, gnl|rn3|chr15 (33011842-33011954) | |
| 362-470, gnl|tetNig1|chrUn_random (52795523-52795409) | |
| 362-470, gnl|xenTro1|scaffold_53 (155646-155535) | |
| 645-773, gnl|bosTau2|chr10 (13798023-13798151) | |
| 645-773, gnl|Hg17|chr14 (22860878-22860750) | |
| 645-773, gnl|Mm7|chr14 (49761437-49761309) |
| Expressed library(ies): 47 entry(ies) | More info |
| Expressed library(ies): 47 entry(ies) | Help | Less info |
| cut (2.03908) | |
| tes (1.03907) | |
| cje (0.991408) | |
| che (0.954198) | |
| cte (0.87822) | |
| elu (0.770713) | |
| cst (0.700182) | |
| cki (0.660939) | |
| sin (0.524843) | |
| bla (0.497389) | |
| cbe (0.478469) | |
| pgl (0.473934) | |
| csk (0.422238) | |
| thg (0.380373) | |
| sto (0.359648) | |
| mcp (0.341297) | |
| spc (0.340097) | |
| vin (0.332557) | |
| sme (0.305437) | |
| nca (0.273748) | |
| ssp (0.271039) | |
| ste (0.270416) | |
| lyg (0.266205) | |
| mgp (0.230681) | |
| nms (0.213858) | |
| aor (0.195274) | |
| ldo (0.194005) | |
| cmu (0.186393) | |
| gul (0.177588) | |
| ill (0.175593) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| eye (0.170503) | |
| cli (0.152812) | |
| lun (0.150489) | |
| ski (0.146735) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| tra (0.123092) | |
| ebs (0.118301) | |
| ecc (0.115035) |
| Expressed library(ies): 47 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cut (2.03908) | |
| tes (1.03907) | |
| cje (0.991408) | |
| che (0.954198) | |
| cte (0.87822) | |
| elu (0.770713) | |
| cst (0.700182) | |
| cki (0.660939) | |
| sin (0.524843) | |
| bla (0.497389) | |
| cbe (0.478469) | |
| pgl (0.473934) | |
| csk (0.422238) | |
| thg (0.380373) | |
| sto (0.359648) | |
| mcp (0.341297) | |
| spc (0.340097) | |
| vin (0.332557) | |
| sme (0.305437) | |
| nca (0.273748) | |
| ssp (0.271039) | |
| ste (0.270416) | |
| lyg (0.266205) | |
| mgp (0.230681) | |
| nms (0.213858) | |
| aor (0.195274) | |
| ldo (0.194005) | |
| cmu (0.186393) | |
| gul (0.177588) | |
| ill (0.175593) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| eye (0.170503) | |
| cli (0.152812) | |
| lun (0.150489) | |
| ski (0.146735) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| tra (0.123092) | |
| ebs (0.118301) | |
| ecc (0.115035) |