Non-Coding RNA Search

Ss1.1-rtra05_i2.5

Sequence:


               
               TACGGTAGAGAGATTTTAATTTTTCCTTCACCAAATTCTAAATGCATTAATTTTAATGAC
AGTTTTAAGACTATAAAAATGCTGTTTTTTTCCATTGGTGATGAAAGTCTGAACTATATG
TCTAGAATCCTCACTCTATCAATCCCTGACCATTTTAAGGCTTTTTGATTTTAAAAAACA
AAATTAACTCAATACATTATCCTGTAATTTACCTTACTTATAAAAATGACTCATTTGATG
AATGGTTTTAATTTTGAAATGTTAAGAGATCCATAAGTTATTAAATGAAGGAAACTCATT
TACAAAACAGGTAGGAAGTGACCCCATGGAAATATTTTTTAGTCTGTGACTTATGACCAT
GCACATTTGATGCCTTTCTAGATGGCACCTTTTTGTTAAACCAGCCCATCCTTTGTCCAG
GTACAGCCTGGCTGGTTTTATTCTTCAGTTACTCTAATCCCTTATGCCTGGTAACTTGAT
TACCATTTTTACATCAGCTCTTGTACTTTTCAGTATGCCTTCATAATGAGTTAATATTGT
CATTTAGCTCTTCTAACAACTCTGGGAAATAAAATCAGGAATTAGGGTAATTTCTTAAAC
TTAGCTCATGTTATAATAAAAAGACAAATTGAAACAAAGTTGTAAGTGTGAATGCTAAGA
ATGAACTTAGGATGTTTGTAAAATAGGGTTTCTTTGTACCACCTATTTTACTTTGCTTGT
AAGAGTTCGGCTAGGGCATGATGTAGCATTTCAGTTTTCAGACCAGGGATTGAACTCCAA
GGGCCTCATGGTAAAAGTGCCAAGTCCTAACCACTAGACCACCAGAGAACTCCCATATAT
TTTATTTTTTTGAAAAAATGCCCATGAGGGAGAAAATGTTTACAGAAAACTTTAAAACAT
ATGTAAAAAAGGGTTTAGAATAGTATAATGAACTCCACCAGCTTCAAAACCTATCATTAT
CGATTAATTGGCCTTTAAAATACAAATAATTTCCACCTGAATAGGAAGAAACTAGGCTTA
TTTCTGTTCCCATTCTATTGGTCACACAGTTTGGCCCACTGTGTTAACTAGCCACCACAG
AAGCCTCAGTGTCCACTGGCTTCATCAGAGTTCACAGTTCCCAAGTTCCATGAAATTCCA
TTTTCCCAACATTTTTTTATTGACACTCTAAGGAGCCTTTGTAGACATTTTTTTTCTAAT
TGCTTCTCCATGTGATTTTAACACCACAGATATACTCTATATTCGCTTATGTACTGTATC
TGTGCTTTGTATACAATAGATCAGAACCAATTTTCACCCCCTTGGGTGTGACACTGCCCT
CAATGAGAATGCGTAGGTTATAAATTTGTAATTGTTTAAAATCTTACAGCGCTTGATATT
TTTTTTGGCTCATAATTAAGTCTTATAAAACGCAATAATTAAATTTACATTTACTCAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACGGTAGAGAGATTTTAATTTTTCCTTCACCAAATTCTAAATGCATTAATTTTAATGAC
AGTTTTAAGACTATAAAAATGCTGTTTTTTTCCATTGGTGATGAAAGTCTGAACTATATG
TCTAGAATCCTCACTCTATCAATCCCTGACCATTTTAAGGCTTTTTGATTTTAAAAAACA
AAATTAACTCAATACATTATCCTGTAATTTACCTTACTTATAAAAATGACTCATTTGATG
AATGGTTTTAATTTTGAAATGTTAAGAGATCCATAAGTTATTAAATGAAGGAAACTCATT
TACAAAACAGGTAGGAAGTGACCCCATGGAAATATTTTTTAGTCTGTGACTTATGACCAT
GCACATTTGATGCCTTTCTAGATGGCACCTTTTTGTTAAACCAGCCCATCCTTTGTCCAG
GTACAGCCTGGCTGGTTTTATTCTTCAGTTACTCTAATCCCTTATGCCTGGTAACTTGAT
TACCATTTTTACATCAGCTCTTGTACTTTTCAGTATGCCTTCATAATGAGTTAATATTGT
CATTTAGCTCTTCTAACAACTCTGGGAAATAAAATCAGGAATTAGGGTAATTTCTTAAAC
TTAGCTCATGTTATAATAAAAAGACAAATTGAAACAAAGTTGTAAGTGTGAATGCTAAGA
ATGAACTTAGGATGTTTGTAAAATAGGGTTTCTTTGTACCACCTATTTTACTTTGCTTGT
AAGAGTTCGGCTAGGGCATGATGTAGCATTTCAGTTTTCAGACCAGGGATTGAACTCCAA
GGGCCTCATGGTAAAAGTGCCAAGTCCTAACCACTAGACCACCAGAGAACTCCCATATAT
TTTATTTTTTTGAAAAAATGCCCATGAGGGAGAAAATGTTTACAGAAAACTTTAAAACAT
ATGTAAAAAAGGGTTTAGAATAGTATAATGAACTCCACCAGCTTCAAAACCTATCATTAT
CGATTAATTGGCCTTTAAAATACAAATAATTTCCACCTGAATAGGAAGAAACTAGGCTTA
TTTCTGTTCCCATTCTATTGGTCACACAGTTTGGCCCACTGTGTTAACTAGCCACCACAG
AAGCCTCAGTGTCCACTGGCTTCATCAGAGTTCACAGTTCCCAAGTTCCATGAAATTCCA
TTTTCCCAACATTTTTTTATTGACACTCTAAGGAGCCTTTGTAGACATTTTTTTTCTAAT
TGCTTCTCCATGTGATTTTAACACCACAGATATACTCTATATTCGCTTATGTACTGTATC
TGTGCTTTGTATACAATAGATCAGAACCAATTTTCACCCCCTTGGGTGTGACACTGCCCT
CAATGAGAATGCGTAGGTTATAAATTTGTAATTGTTTAAAATCTTACAGCGCTTGATATT
TTTTTTGGCTCATAATTAAGTCTTATAAAACGCAATAATTAAATTTACATTTACTCAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1165-1311, - strand, RNAz p=0.943184

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1165-1311, - strand, RNAz p=0.943184

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AY763579, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AY763579, -

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               5-709, gnl|bosTau2|chr9 (24941001-24940318)
               

               
               5-709, gnl|Hg17|chr15 (20557435-20556710)
               


               
               344-633, gnl|bosTau2|chr10 (47979134-47979410)
               

               
               344-633, gnl|Hg17|chr15 (20557064-20556793)
               


               
               848-1437, gnl|bosTau2|chr9 (24940289-24939687)
               

               
               848-1437, gnl|Hg17|chr15 (20556673-20556020)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-709, gnl|bosTau2|chr9 (24941001-24940318)
               

               
               5-709, gnl|Hg17|chr15 (20557435-20556710)
               


               
               344-633, gnl|bosTau2|chr10 (47979134-47979410)
               

               
               344-633, gnl|Hg17|chr15 (20557064-20556793)
               


               
               848-1437, gnl|bosTau2|chr9 (24940289-24939687)
               

               
               848-1437, gnl|Hg17|chr15 (20556673-20556020)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               sug (0.509165)
               

               
               bfe (0.449573)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.509165)
               

               
               bfe (0.449573)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

	5-709, gnl\|bosTau2\|chr9 (24941001-24940318)
	5-709, gnl\|Hg17\|chr15 (20557435-20556710)

	344-633, gnl\|bosTau2\|chr10 (47979134-47979410)
	344-633, gnl\|Hg17\|chr15 (20557064-20556793)

	848-1437, gnl\|bosTau2\|chr9 (24940289-24939687)
	848-1437, gnl\|Hg17\|chr15 (20556673-20556020)

	sug (0.509165)
	bfe (0.449573)
	mgp (0.230681)
	hea (0.204499)
	nlu (0.191681)
	ill (0.175593)
	fco (0.157208)
	ski (0.146735)
	lin (0.145603)
	hyp (0.142837)
	kid (0.129735)
	thg (0.126791)
	tra (0.123092)
	ebs (0.118301)
	ldo (0.0970026)