Ss1.1-rtra05_k8.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAGATTATGATTTGAAAATTAGTAAAACTCTTGACATTTCCACTGATGTTAAAAGTGAT ACCCATGTGTGATGGAACATCTGGAAGATAAAGAACATTTACAACAAAAATTGAAGTTAC ATCAAGTCTTAAGAGCAATTAAATGGAAGTCCGATGCCTGATGAAAATGGCCACATTCCT GGTTGGGTCCCAGTGGAGAAAAACAACAAACAGTATTGCTGGCATTCCTCTGTAGTTAAT TATGAATTTGAAATTGCCCTGGTGCTGAAGCATCATTCTGATGATCCTGGTCTTTTGGAA ATTAGTGCAGTGCCTCTCTCAGATCTCTTAGAACAAACACTGGAGCTTATAGGAACCAAT ATTAATGGAAACCCATATGGGTTAGGAAGCAAGAAGCATCCATTACATCTTCTTATACCA CATGGAGCGTTCCAGATAAGAAATCTGCCTACCTTGAAGCACAACGATCTATTGTCCTGG TTTGAAGGTTGCAGAGAGGGTAAAATTGAAGGAATAGTATGGCATTGCAATGATGGCTGT TTAATCAAGGTCCATCGCCATCACCTGGGTTTATGCTGGCCAATCCCAGATACTTACCTG AACTCAAAACCGGTTACTATCAATATGAATCTGAACAAATATGAGTATGCCTTTGATGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAGATTATGATTTGAAAATTAGTAAAACTCTTGACATTTCCACTGATGTTAAAAGTGAT ACCCATGTGTGATGGAACATCTGGAAGATAAAGAACATTTACAACAAAAATTGAAGTTAC ATCAAGTCTTAAGAGCAATTAAATGGAAGTCCGATGCCTGATGAAAATGGCCACATTCCT GGTTGGGTCCCAGTGGAGAAAAACAACAAACAGTATTGCTGGCATTCCTCTGTAGTTAAT TATGAATTTGAAATTGCCCTGGTGCTGAAGCATCATTCTGATGATCCTGGTCTTTTGGAA ATTAGTGCAGTGCCTCTCTCAGATCTCTTAGAACAAACACTGGAGCTTATAGGAACCAAT ATTAATGGAAACCCATATGGGTTAGGAAGCAAGAAGCATCCATTACATCTTCTTATACCA CATGGAGCGTTCCAGATAAGAAATCTGCCTACCTTGAAGCACAACGATCTATTGTCCTGG TTTGAAGGTTGCAGAGAGGGTAAAATTGAAGGAATAGTATGGCATTGCAATGATGGCTGT TTAATCAAGGTCCATCGCCATCACCTGGGTTTATGCTGGCCAATCCCAGATACTTACCTG AACTCAAAACCGGTTACTATCAATATGAATCTGAACAAATATGAGTATGCCTTTGATGCT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 3-380, gnl|bosTau2|chr10 (47291950-47292333) | |
| 3-380, gnl|Hg17|chr12 (86941658-86942025) | |
| 3-380, gnl|Mm7|chr10 (100064167-100063802) | |
| 548-660, gnl|bosTau2|chr10 (47294802-47294914) | |
| 548-660, gnl|canFam2|chr15 (32206661-32206830) | |
| 548-660, gnl|canFam2|chr15 (32206659-32206874) | |
| 548-660, gnl|danRer3|chr25 (12535118-12534955) | |
| 548-660, gnl|dasNov1|scaffold_65880 (464-634) | |
| 548-660, gnl|dasNov1|scaffold_65880 (463-677) | |
| 548-660, gnl|echTel1|scaffold_289845 (63527-63357) | |
| 548-660, gnl|echTel1|scaffold_289845 (63528-63315) | |
| 548-660, gnl|galGal2|chr1 (39594908-39595120) | |
| 548-660, gnl|Hg17|chr12 (86944477-86944589) | |
| 548-660, gnl|hg17|chr3 (110599228-110599432) | |
| 548-660, gnl|hg17|chr8 (89567252-89567421) | |
| 548-660, gnl|loxAfr1|scaffold_32060 (34876-34706) | |
| 548-660, gnl|loxAfr1|scaffold_32060 (34877-34669) | |
| 548-660, gnl|mm7|chr10 (100060404-100060228) | |
| 548-660, gnl|mm7|chr10 (100060401-100060200) | |
| 548-660, gnl|Mm7|chr10 (100060404-100060286) | |
| 548-660, gnl|monDom2|scaffold_36 (24354002-24354172) | |
| 548-660, gnl|monDom2|scaffold_36 (24354002-24354222) | |
| 548-660, gnl|oryCun1|scaffold_126106 (4314-4115) | |
| 548-660, gnl|oryCun1|scaffold_1275 (3793-3627) | |
| 548-660, gnl|panTro1|chr2 (112132475-112132680) | |
| 548-660, gnl|panTro1|chr7 (91754441-91754611) | |
| 548-660, gnl|rheMac2|chr2 (29536294-29536493) | |
| 548-660, gnl|rheMac2|chr8 (91140331-91140501) | |
| 548-660, gnl|rn3|chr2 (73861494-73861295) | |
| 548-660, gnl|rn3|chr7 (38249092-38248922) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-380, gnl|bosTau2|chr10 (47291950-47292333) | |
| 3-380, gnl|Hg17|chr12 (86941658-86942025) | |
| 3-380, gnl|Mm7|chr10 (100064167-100063802) | |
| 548-660, gnl|bosTau2|chr10 (47294802-47294914) | |
| 548-660, gnl|canFam2|chr15 (32206661-32206830) | |
| 548-660, gnl|canFam2|chr15 (32206659-32206874) | |
| 548-660, gnl|danRer3|chr25 (12535118-12534955) | |
| 548-660, gnl|dasNov1|scaffold_65880 (464-634) | |
| 548-660, gnl|dasNov1|scaffold_65880 (463-677) | |
| 548-660, gnl|echTel1|scaffold_289845 (63527-63357) | |
| 548-660, gnl|echTel1|scaffold_289845 (63528-63315) | |
| 548-660, gnl|galGal2|chr1 (39594908-39595120) | |
| 548-660, gnl|Hg17|chr12 (86944477-86944589) | |
| 548-660, gnl|hg17|chr3 (110599228-110599432) | |
| 548-660, gnl|hg17|chr8 (89567252-89567421) | |
| 548-660, gnl|loxAfr1|scaffold_32060 (34876-34706) | |
| 548-660, gnl|loxAfr1|scaffold_32060 (34877-34669) | |
| 548-660, gnl|mm7|chr10 (100060404-100060228) | |
| 548-660, gnl|mm7|chr10 (100060401-100060200) | |
| 548-660, gnl|Mm7|chr10 (100060404-100060286) | |
| 548-660, gnl|monDom2|scaffold_36 (24354002-24354172) | |
| 548-660, gnl|monDom2|scaffold_36 (24354002-24354222) | |
| 548-660, gnl|oryCun1|scaffold_126106 (4314-4115) | |
| 548-660, gnl|oryCun1|scaffold_1275 (3793-3627) | |
| 548-660, gnl|panTro1|chr2 (112132475-112132680) | |
| 548-660, gnl|panTro1|chr7 (91754441-91754611) | |
| 548-660, gnl|rheMac2|chr2 (29536294-29536493) | |
| 548-660, gnl|rheMac2|chr8 (91140331-91140501) | |
| 548-660, gnl|rn3|chr2 (73861494-73861295) | |
| 548-660, gnl|rn3|chr7 (38249092-38248922) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| bfe (0.149858) | |
| ret (0.128733) | |
| tra (0.123092) |