Non-Coding RNA Search

Ss1.1-rtra05_m18.5

Sequence:


               
               GCTTGTTAGCTAATATAAGTTTTGTACACTAAGATGTTCGGGTTTATAGTTTATGTGTGT
ATATATTATATAAATATGTATGTATATATAAATATTATGCTCAGTTTGGAGTCTGGCACA
ACTCCATTCTGTGGATTAGAGAGTAAAATATTATGGATGATAAAGTACTAAATGAAACAT
AATATTTATTTATAAAGGGGTGTAGATCTTTCAATCACAGGCAACAGCTCTATAAAAGTT
GTGTGTGAGGAGACAGGCCTTTGACCTCCTGGAAAGCACTGCTCAGAAGTCACTAGTGAC
CATTCTTTTTATTCTCAAAATAAAGCTTCATAGAAAACATGCTAAGATTTTATTTACAGG
GAATTCTTAGATGCATTTCAGTTGTTGTATCGTCAGGCAGGGCCAGCACTGAGTAATGAT
CGACCCCCCTGTTTGTAGAGTCACGCGTCTTGATTAGAAGTTAAGAGTTTTATGTTGTTG
GTCTCTTCTGGTTCTTTTTTGTTTGTAGGCGGAAAGGCACTGAAAAAAGTACAGCTTTTA
AAACTTGAATAATTCTCTAGGTGTATCTCCTTAGGAAACTTCGTGACGTAGCCACGGAAA
GGAAAGACGTGGCACCAAAAGTGACTTCATTTAGCGGTTATGATTCCTTTTGTAAAATAT
TAAAAAAAAATGCCATATTTTTTGGAGAAAAGTTAGACTATATAAGGGATTCTGTTGTTT
GTTTCTAAAGAAGACTCGTGTTCTTTTGGGGAACCAGTGCCTTATTGAATTTGTACATAC
TGTAATTATTCAGGATGAGGGAACAAACAGTTGTGTTGTCTTTGTTACAAAGTGTATATG
GCTTTGTTTTAACATTCCCCCAAATAAAACGGTTTCATTCTCCCCTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTGTTAGCTAATATAAGTTTTGTACACTAAGATGTTCGGGTTTATAGTTTATGTGTGT
ATATATTATATAAATATGTATGTATATATAAATATTATGCTCAGTTTGGAGTCTGGCACA
ACTCCATTCTGTGGATTAGAGAGTAAAATATTATGGATGATAAAGTACTAAATGAAACAT
AATATTTATTTATAAAGGGGTGTAGATCTTTCAATCACAGGCAACAGCTCTATAAAAGTT
GTGTGTGAGGAGACAGGCCTTTGACCTCCTGGAAAGCACTGCTCAGAAGTCACTAGTGAC
CATTCTTTTTATTCTCAAAATAAAGCTTCATAGAAAACATGCTAAGATTTTATTTACAGG
GAATTCTTAGATGCATTTCAGTTGTTGTATCGTCAGGCAGGGCCAGCACTGAGTAATGAT
CGACCCCCCTGTTTGTAGAGTCACGCGTCTTGATTAGAAGTTAAGAGTTTTATGTTGTTG
GTCTCTTCTGGTTCTTTTTTGTTTGTAGGCGGAAAGGCACTGAAAAAAGTACAGCTTTTA
AAACTTGAATAATTCTCTAGGTGTATCTCCTTAGGAAACTTCGTGACGTAGCCACGGAAA
GGAAAGACGTGGCACCAAAAGTGACTTCATTTAGCGGTTATGATTCCTTTTGTAAAATAT
TAAAAAAAAATGCCATATTTTTTGGAGAAAAGTTAGACTATATAAGGGATTCTGTTGTTT
GTTTCTAAAGAAGACTCGTGTTCTTTTGGGGAACCAGTGCCTTATTGAATTTGTACATAC
TGTAATTATTCAGGATGAGGGAACAAACAGTTGTGTTGTCTTTGTTACAAAGTGTATATG
GCTTTGTTTTAACATTCCCCCAAATAAAACGGTTTCATTCTCCCCTTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               41-194, - strand, RNAz p=0.999024

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-194, - strand, RNAz p=0.999024

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

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               101-194, AU253053 human favorable neuroblastoma cDNA Homo sapiens cDNA clone 
(dbj|AU253053.1|), blast E-value=8.99999e-40, identity=97.87% 
               

               
               101-194, 537121 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BM483610.1|), 
blast E-value=8.99999e-40, identity=97.87% 
               

               
               101-194, AGENCOURT_15463101 Lupski_anterior_horn Homo sapiens cDNA clone 
(gb|CF454867.1|), blast E-value=8.99999e-40, identity=97.87% 
               

               
               101-194, UMC-bof_0B02-001-e10 Ovarian Follicle bof Bos taurus cDNA 3', mRNA 
(gb|CV983841.1|), blast E-value=8.99999e-40, identity=97.87% 
               

               
               101-194, 010126BEMN053366HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY111768.1|), blast E-value=8.99999e-40, identity=97.87% 
               

               
               101-194, 010126BEMN053376HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY161188.1|), blast E-value=8.99999e-40, identity=97.87%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               101-194, AU253053 human favorable neuroblastoma cDNA Homo sapiens cDNA clone 
(dbj|AU253053.1|), blast E-value=8.99999e-40, identity=97.87% 
               

               
               101-194, 537121 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BM483610.1|), 
blast E-value=8.99999e-40, identity=97.87% 
               

               
               101-194, AGENCOURT_15463101 Lupski_anterior_horn Homo sapiens cDNA clone 
(gb|CF454867.1|), blast E-value=8.99999e-40, identity=97.87% 
               

               
               101-194, UMC-bof_0B02-001-e10 Ovarian Follicle bof Bos taurus cDNA 3', mRNA 
(gb|CV983841.1|), blast E-value=8.99999e-40, identity=97.87% 
               

               
               101-194, 010126BEMN053366HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY111768.1|), blast E-value=8.99999e-40, identity=97.87% 
               

               
               101-194, 010126BEMN053376HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY161188.1|), blast E-value=8.99999e-40, identity=97.87%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-888, gnl|bosTau2|chr6 (12201414-12200535)
               

               
               2-888, gnl|Hg17|chr4 (96435889-96436769)
               

               
               2-888, gnl|Mm7|chr3 (141731805-141730987)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-888, gnl|bosTau2|chr6 (12201414-12200535)
               

               
               2-888, gnl|Hg17|chr4 (96435889-96436769)
               

               
               2-888, gnl|Mm7|chr3 (141731805-141730987)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               tra (0.246184)
               

               
               spc (0.226732)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.246184)
               

               
               spc (0.226732)

	101-194, AU253053 human favorable neuroblastoma cDNA Homo sapiens cDNA clone (dbj\|AU253053.1\|), blast E-value=8.99999e-40, identity=97.87%
	101-194, 537121 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb\|BM483610.1\|), blast E-value=8.99999e-40, identity=97.87%
	101-194, AGENCOURT_15463101 Lupski_anterior_horn Homo sapiens cDNA clone (gb\|CF454867.1\|), blast E-value=8.99999e-40, identity=97.87%
	101-194, UMC-bof_0B02-001-e10 Ovarian Follicle bof Bos taurus cDNA 3', mRNA (gb\|CV983841.1\|), blast E-value=8.99999e-40, identity=97.87%
	101-194, 010126BEMN053366HT BEMN Bos taurus cDNA, mRNA sequence (gb\|DY111768.1\|), blast E-value=8.99999e-40, identity=97.87%
	101-194, 010126BEMN053376HT BEMN Bos taurus cDNA, mRNA sequence (gb\|DY161188.1\|), blast E-value=8.99999e-40, identity=97.87%

	2-888, gnl\|bosTau2\|chr6 (12201414-12200535)
	2-888, gnl\|Hg17\|chr4 (96435889-96436769)
	2-888, gnl\|Mm7\|chr3 (141731805-141730987)