Non-Coding RNA Search

Ss1.1-rtra05_n14.5

Sequence:


               
               TGCCTTAACTTTAACCAATATTTTCTTCTGTTTTGCTGCATTTGAAAGTGAGGTCATGAT
GGGGCTAGGGCTGGGCATTTTACTTCTGATCTCTGAATCAATTGGATTTCCAGCAATGGC
TGAATTTTATAGAACCACAGACAACCTCTGGAACATTCTGAGACCCTTTTGAGATATAAG
TCCTTAAGTACTTTTTGCCATGAAGCAGTATGGCATATATCATAGTAGTTTTCCCTATCA
GATACTGAGCTACTTCAGTTAGTTACACTTGATTATTTTTTTTTAATTTCCAAACACTAC
TAGGAAAATATATTCTTGCGCACTGATTATAAAAAGTCTTTTTTGGCTTCTAGAGCACAT
GAGCAATTGAACTTGATTTAAAACTAGAGTCATAGGTCACATGTGCTATATAGTAATTTA
TTCCTTGGCTTCCGCTCATGTAAAGTTAATATATAATATGAAAAAGGTCATTTTTGTAAC
CCTGAAATTTTTCTTCAGCTGAGAGCAACCAAAATTCCTTATATATGTAAATCCATATAT
TGGAACACAAAATTTTATATGACGCAAATTCACTCAGCACAATGGACTCATTATTCTCTA
GAATGTTTCTGCAAAACTTACATTGCTTTAGAATTCTTAAATTTAAACTTGTGCAATGAC
CAGCACCCAAAGTCTATGAAAAATGCCGGTAGATGATGTGGAAAACTCCCTCCACTGCTG
CCCAGCCCTCAGGACATGTGACTTCGTCAAAGGAGAGATTCTTTTTTCTAGGAAAAATGA
GCCTCTTTTTATTTTATTTTGTTTTATTTTATTGACACAAACTGTAGATTTTAGCAGCCC
TGGCCCAAAGGAATTTGATTACTTTTGTTTTAAACAGTACAAAGGGGACACTATGGTTAC
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCTTAACTTTAACCAATATTTTCTTCTGTTTTGCTGCATTTGAAAGTGAGGTCATGAT
GGGGCTAGGGCTGGGCATTTTACTTCTGATCTCTGAATCAATTGGATTTCCAGCAATGGC
TGAATTTTATAGAACCACAGACAACCTCTGGAACATTCTGAGACCCTTTTGAGATATAAG
TCCTTAAGTACTTTTTGCCATGAAGCAGTATGGCATATATCATAGTAGTTTTCCCTATCA
GATACTGAGCTACTTCAGTTAGTTACACTTGATTATTTTTTTTTAATTTCCAAACACTAC
TAGGAAAATATATTCTTGCGCACTGATTATAAAAAGTCTTTTTTGGCTTCTAGAGCACAT
GAGCAATTGAACTTGATTTAAAACTAGAGTCATAGGTCACATGTGCTATATAGTAATTTA
TTCCTTGGCTTCCGCTCATGTAAAGTTAATATATAATATGAAAAAGGTCATTTTTGTAAC
CCTGAAATTTTTCTTCAGCTGAGAGCAACCAAAATTCCTTATATATGTAAATCCATATAT
TGGAACACAAAATTTTATATGACGCAAATTCACTCAGCACAATGGACTCATTATTCTCTA
GAATGTTTCTGCAAAACTTACATTGCTTTAGAATTCTTAAATTTAAACTTGTGCAATGAC
CAGCACCCAAAGTCTATGAAAAATGCCGGTAGATGATGTGGAAAACTCCCTCCACTGCTG
CCCAGCCCTCAGGACATGTGACTTCGTCAAAGGAGAGATTCTTTTTTCTAGGAAAAATGA
GCCTCTTTTTATTTTATTTTGTTTTATTTTATTGACACAAACTGTAGATTTTAGCAGCCC
TGGCCCAAAGGAATTTGATTACTTTTGTTTTAAACAGTACAAAGGGGACACTATGGTTAC
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-912, gnl|bosTau2|chr20 (11993828-11994736)
               

               
               1-912, gnl|Hg17|chr5 (58302784-58301857)
               

               
               1-912, gnl|Mm7|chr13 (107104333-107105242)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-912, gnl|bosTau2|chr20 (11993828-11994736)
               

               
               1-912, gnl|Hg17|chr5 (58302784-58301857)
               

               
               1-912, gnl|Mm7|chr13 (107104333-107105242)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

Help | Less info


               
               clu (0.717875)
               

               
               isp (0.300752)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               nca (0.273748)
               

               
               che (0.272628)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               eje (0.0988338)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.717875)
               

               
               isp (0.300752)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               nca (0.273748)
               

               
               che (0.272628)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               eje (0.0988338)

	1-912, gnl\|bosTau2\|chr20 (11993828-11994736)
	1-912, gnl\|Hg17\|chr5 (58302784-58301857)
	1-912, gnl\|Mm7\|chr13 (107104333-107105242)

	clu (0.717875)
	isp (0.300752)
	cte (0.29274)
	liv (0.292569)
	nca (0.273748)
	che (0.272628)
	rec (0.17307)
	fhi (0.169578)
	tbr (0.154178)
	bfe (0.149858)
	lyg (0.133103)
	nmm (0.132802)
	kid (0.129735)
	thg (0.126791)
	tra (0.123092)
	eje (0.0988338)