Non-Coding RNA Search

Ss1.1-rtra05_n3.5

Sequence:


               
               GTGCCCTCTGCCGCGTTCTCTCTTTTACAGGCTGTTTGACTCACCCGCTGAAGTGATTTC
CGGAAGGACTCATTAGACACGCTGTTGGATTTAACGCATCTGATGAAACCCAAGGTGTAG
CTATAAAGAAACAAGCTGTATAATTTATCCCCACACATACCGGAATTCAGATGTTGCATC
ACTTTATGTAAATGATGCTATGACTGGAAATATTTGTGAGGTGGGTTTTCTGATTGCTTG
CCCACTATTTCAATGCTTTGTCATTGCATTTTTTTATAGTCCATCCCCCAGTTTGATCAG
CCATTTCCTTTGGTCTGCACATGATGAGAAATCTCAAAGTACTTTCCCTGGTAGTATTTG
CACAGCACTGCACATGATGAGAAATCTCAGAGTACTGTCCCCGGTAGTATTTGCACAGCA
CTAACATTGTTGGAGTAAGTACATGGACTGCTTGAATGAAGGGACACAGCCCCACAGTGA
GATCCTTTATAGTTACACCTTGTATATCAAAGGCATTCAGGCCCTGTTCTATAATGGTTT
TTATACTCACACAGAAGAGGGAAGCCTGTTTGCTTTTTTAACTTCTGCATGAAAGATGAC
ATCTGAACTATCTGATGTGTATTATAATAATACCAGCTTCTGCTCTGGAACTACTTTGAG
GGCAATGGTGGTAATAGCAAATGACCTCCTTTTAACAAGACACTCAACTCAAACAGTGCC
ATTTAGTTCAGGAGATCTCTAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGCCCTCTGCCGCGTTCTCTCTTTTACAGGCTGTTTGACTCACCCGCTGAAGTGATTTC
CGGAAGGACTCATTAGACACGCTGTTGGATTTAACGCATCTGATGAAACCCAAGGTGTAG
CTATAAAGAAACAAGCTGTATAATTTATCCCCACACATACCGGAATTCAGATGTTGCATC
ACTTTATGTAAATGATGCTATGACTGGAAATATTTGTGAGGTGGGTTTTCTGATTGCTTG
CCCACTATTTCAATGCTTTGTCATTGCATTTTTTTATAGTCCATCCCCCAGTTTGATCAG
CCATTTCCTTTGGTCTGCACATGATGAGAAATCTCAAAGTACTTTCCCTGGTAGTATTTG
CACAGCACTGCACATGATGAGAAATCTCAGAGTACTGTCCCCGGTAGTATTTGCACAGCA
CTAACATTGTTGGAGTAAGTACATGGACTGCTTGAATGAAGGGACACAGCCCCACAGTGA
GATCCTTTATAGTTACACCTTGTATATCAAAGGCATTCAGGCCCTGTTCTATAATGGTTT
TTATACTCACACAGAAGAGGGAAGCCTGTTTGCTTTTTTAACTTCTGCATGAAAGATGAC
ATCTGAACTATCTGATGTGTATTATAATAATACCAGCTTCTGCTCTGGAACTACTTTGAG
GGCAATGGTGGTAATAGCAAATGACCTCCTTTTAACAAGACACTCAACTCAAACAGTGCC
ATTTAGTTCAGGAGATCTCTAAGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               491-608, - strand, RNAz p=0.69346

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               491-608, - strand, RNAz p=0.69346

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               479-587, - strand, RNAmicro p=0.980066

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               479-587, - strand, RNAmicro p=0.980066

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               374-631, gnl|bosTau2|chr10 (973543-973803)
               

               
               374-631, gnl|Hg17|chr3 (15684189-15683936)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               374-631, gnl|bosTau2|chr10 (973543-973803)
               

               
               374-631, gnl|Hg17|chr3 (15684189-15683936)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               sme (0.305437)
               

               
               thg (0.253582)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               thg (0.253582)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)

	374-631, gnl\|bosTau2\|chr10 (973543-973803)
	374-631, gnl\|Hg17\|chr3 (15684189-15683936)

	sme (0.305437)
	thg (0.253582)
	sug (0.127291)
	bla (0.124347)
	tra (0.123092)
	ebs (0.118301)