Non-Coding RNA Search

Ss1.1-rtra06_c17.5

Sequence:


               
               CTCAGTTTTTCTGGGTCTATCCTGATGTTTTTGAATATAAAGGCCACTATGGTAGGTAGA
ATAATGGCCACTCAAAGATAGCACTGTCTTAATTACCAAAACCTTTGGATATGTTACATT
ATATTGCAAAAAGACTTTGTAGATTAAGGACCTTAATTTAAGATTCTGAGTTGAGGAAGG
ACCTTTGTGATTAAGGACCTTAATTTAAGATTCTGAGTTGAGGGAGTTACTGTGGATTAT
CTGGGGGAGCCTAAGTGTAATCATAATGGTCCTTAAAAGTGGAAGAGGGAGGTAAAAGCA
GAGGTCAGAGTGATGTGGTGTAAGGACTTGACCCACTTTTACTGACTTTGAAGGAAGGGG
ACATGAACCAAGGAATGCAGGCCTCTAGAAAGTGGAAAAGGCAAGGAAGTGTTCTTCCCT
TGTGCCTCAGAAAGGAGCAGCCGTGCTGAGACCTTGACTTTAACTCATGTTAACCTTCAG
ACCTCCAGAGCCAGAAGATAATAAACGTTGTTTTAAGCCACTGAGTTTGTGATAATTTGT
TACAGCAGCAAATAGACTAATTTTGAGGTGAAAAAATGTACCTTTAGTATCATATCTGTA
TTTTTTCCTCTTGTAATTATTTTTAAATCCACCTACCTTTCTGAAATGTCTGATAAGTTA
ATGTTTGTAAAGTCCTCTAAATGTATTGATAAAAATCTTAATGTAAGTAATAAAATCTAA
ATAAAGAAATATTTTGCCTAGTGAGTTAGTGTAATGAATAATGATAATTTCTGTGATTTT
TTTTATTGGTATTTCTTCTCATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCAGTTTTTCTGGGTCTATCCTGATGTTTTTGAATATAAAGGCCACTATGGTAGGTAGA
ATAATGGCCACTCAAAGATAGCACTGTCTTAATTACCAAAACCTTTGGATATGTTACATT
ATATTGCAAAAAGACTTTGTAGATTAAGGACCTTAATTTAAGATTCTGAGTTGAGGAAGG
ACCTTTGTGATTAAGGACCTTAATTTAAGATTCTGAGTTGAGGGAGTTACTGTGGATTAT
CTGGGGGAGCCTAAGTGTAATCATAATGGTCCTTAAAAGTGGAAGAGGGAGGTAAAAGCA
GAGGTCAGAGTGATGTGGTGTAAGGACTTGACCCACTTTTACTGACTTTGAAGGAAGGGG
ACATGAACCAAGGAATGCAGGCCTCTAGAAAGTGGAAAAGGCAAGGAAGTGTTCTTCCCT
TGTGCCTCAGAAAGGAGCAGCCGTGCTGAGACCTTGACTTTAACTCATGTTAACCTTCAG
ACCTCCAGAGCCAGAAGATAATAAACGTTGTTTTAAGCCACTGAGTTTGTGATAATTTGT
TACAGCAGCAAATAGACTAATTTTGAGGTGAAAAAATGTACCTTTAGTATCATATCTGTA
TTTTTTCCTCTTGTAATTATTTTTAAATCCACCTACCTTTCTGAAATGTCTGATAAGTTA
ATGTTTGTAAAGTCCTCTAAATGTATTGATAAAAATCTTAATGTAAGTAATAAAATCTAA
ATAAAGAAATATTTTGCCTAGTGAGTTAGTGTAATGAATAATGATAATTTCTGTGATTTT
TTTTATTGGTATTTCTTCTCATGT

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               191-770, gnl|bosTau2|chr4 (1772811-1773424)
               

               
               191-770, gnl|Hg17|chr7 (91147483-91146825)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               191-770, gnl|bosTau2|chr4 (1772811-1773424)
               

               
               191-770, gnl|Hg17|chr7 (91147483-91146825)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

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               isp (0.451128)
               

               
               lyg (0.399308)
               

               
               vin (0.332557)
               

               
               tra (0.246184)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               med (0.116252)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.451128)
               

               
               lyg (0.399308)
               

               
               vin (0.332557)
               

               
               tra (0.246184)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               med (0.116252)

	191-770, gnl\|bosTau2\|chr4 (1772811-1773424)
	191-770, gnl\|Hg17\|chr7 (91147483-91146825)

	isp (0.451128)
	lyg (0.399308)
	vin (0.332557)
	tra (0.246184)
	tbr (0.154178)
	bfe (0.149858)
	lin (0.145603)
	med (0.116252)