Non-Coding RNA Search

Ss1.1-rtra07_h8.5

Sequence:


               
               GCAATGAGATCCTGCTGTGCAGCACAGGGAACTATACCGAGTCACTTGTGATGGAGCATG
ATGGAGGATACTGTGAGAAAAAGAATGTATGGGTTTGCTGGGTTACTTGATTGTACAGCA
GAAATTGACAGAACGTTGCAAATCAACTATTAAAAAACCTTCAAAAAACTCCAAAAGGTC
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------TTCAGCCATAGG
AAGAAAAATAAAAATAAAGTCAGCTGATGCCTTTTCATGAATCAGCAAATTAGAAAGAAG
CACAAAATGCATCATTAATAATGTAAAGAACACAGGAGCCAATGGTATGGGGTTTTTTTT
TGGTTTGTTTTGTGTTTTGTTTTGTTTTTAAGACAAAGTAAGGCTGAGGGATGCTGGTGA
GAGATTGCCAAGCTCTGAGAGATTCTGTCTGTCAACTAGTTTTCCTCTTTCTACCTCCCA
GCCAAGCTTCAGAGGAAACTTTTTTTTTTTAATGATTTTTAATTTTTCCATTATATTTGG
TTTATGGAAACTCTTTTCATGTGAACTGGAAAAGATGAATTTCAAGCTTCATTGAGAGCT
TGAAAACCTTAAATCCTTCTTGAGAATAACCTGTCTCTCAGGAATCTTTGGTCAAAGAAT
TATAAAGCTTTTTTCTTGGGCTGTGGAATGCCTGCATTATTAAGTATGATTACTTAAGTC
TCAGAATAGAAGGATGTAATAAATCTGAAAGTATTTGTTCTGGTTTGTGACTAAGCAAAA
CTGTATAATATTAAATCAGATGTTGTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAATGAGATCCTGCTGTGCAGCACAGGGAACTATACCGAGTCACTTGTGATGGAGCATG
ATGGAGGATACTGTGAGAAAAAGAATGTATGGGTTTGCTGGGTTACTTGATTGTACAGCA
GAAATTGACAGAACGTTGCAAATCAACTATTAAAAAACCTTCAAAAAACTCCAAAAGGTC
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------TTCAGCCATAGG
AAGAAAAATAAAAATAAAGTCAGCTGATGCCTTTTCATGAATCAGCAAATTAGAAAGAAG
CACAAAATGCATCATTAATAATGTAAAGAACACAGGAGCCAATGGTATGGGGTTTTTTTT
TGGTTTGTTTTGTGTTTTGTTTTGTTTTTAAGACAAAGTAAGGCTGAGGGATGCTGGTGA
GAGATTGCCAAGCTCTGAGAGATTCTGTCTGTCAACTAGTTTTCCTCTTTCTACCTCCCA
GCCAAGCTTCAGAGGAAACTTTTTTTTTTTAATGATTTTTAATTTTTCCATTATATTTGG
TTTATGGAAACTCTTTTCATGTGAACTGGAAAAGATGAATTTCAAGCTTCATTGAGAGCT
TGAAAACCTTAAATCCTTCTTGAGAATAACCTGTCTCTCAGGAATCTTTGGTCAAAGAAT
TATAAAGCTTTTTTCTTGGGCTGTGGAATGCCTGCATTATTAAGTATGATTACTTAAGTC
TCAGAATAGAAGGATGTAATAAATCTGAAAGTATTTGTTCTGGTTTGTGACTAAGCAAAA
CTGTATAATATTAAATCAGATGTTGTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               193-457, gnl|bosTau2|chr16 (10594133-10593855)
               

               
               193-457, gnl|Hg17|chr1 (217385076-217385407)
               


               
               498-773, gnl|bosTau2|chr16 (10593866-10593588)
               

               
               498-773, gnl|Hg17|chr1 (217385396-217385668)
               

               
               498-773, gnl|Mm7|chr1 (184301976-184301592)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               193-457, gnl|bosTau2|chr16 (10594133-10593855)
               

               
               193-457, gnl|Hg17|chr1 (217385076-217385407)
               


               
               498-773, gnl|bosTau2|chr16 (10593866-10593588)
               

               
               498-773, gnl|Hg17|chr1 (217385396-217385668)
               

               
               498-773, gnl|Mm7|chr1 (184301976-184301592)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eje (0.0988338)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eje (0.0988338)

	193-457, gnl\|bosTau2\|chr16 (10594133-10593855)
	193-457, gnl\|Hg17\|chr1 (217385076-217385407)

	498-773, gnl\|bosTau2\|chr16 (10593866-10593588)
	498-773, gnl\|Hg17\|chr1 (217385396-217385668)
	498-773, gnl\|Mm7\|chr1 (184301976-184301592)