Non-Coding RNA Search

Ss1.1-rtra07_j12.5

Sequence:


               
               ATAAATAAAAGATGCTGATTTATTGTAAATTATGGTTCTATTTTCTCAATGTATTAACTT
GGAAAAAAAATTTTAGCCTTATCTATCCCAACCTATCCCAATAGCAGTGGCTGAGTTTTG
CAGATTTAAAACTGAGATGATTGTATACAAGTCACTCTACTGAATTCCCTTTTCTAAAGT
AACTTCTTCAAAGCTACGAAAATGTGTCAAAGTGCACATTGTGTAGGTAAAATTCTTAAG
GATTGTTCTCAGTCCCTCAGTTCTCCAGTGGACTGTTAAATACTGATTCAGTTAAAGGAA
ATTATCTTTTACATACTTTTTTTGTAGAAGTGGATGGATGGAATTGATTTTTGAATAGGC
ACTATTTAACTCATTACCTGGCACTAGCAACGTAATTTTTTTTTAGAAAAAGTAACTGGG
GAAAAAATGTGGGCCATGTATTAAATCACTGAAGAGGGATATATCTGACCAACAGATATT
GTCTTTGGGCATAAATGAAATGCAACACATGCACTTTGTGTGTCTCTTCTTAATTTAAAG
GAGGGTTGGAGGGATGTTTTCTTATCCTGTGTATAATTCTGTATTGCCTAGGATATTACA
GTAGAGCACTCAATTGTGGGTTTTGTGTATTGAGGATTTGTTTGAATTTCAAATTATAGT
TATGTACTGGGCGTTACAGACTTACAACAGCATAGTAAGTGGTAAGACTAGTGCAAAACA
TTTATTTCTGAAAATTAAAGACCATTATTGCCACCAAATCATTGTGACTGTTGCATATGC
ATTTTGCCTTTGTTAATTTTAAACATGATTTCAGTATCACTAGTGATCACCTTTGTTTCG
AGTGGACTGTTCTCTTAATTTTGTATATAACTTGTCTAAATTTTATGTACAGTCTTTTAT
AATAAACCATTCTCTATATGAAATTTTGAATACTGTAAAAGTCTAATGTGGATTGAAATG
TAGACATCACAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAAATAAAAGATGCTGATTTATTGTAAATTATGGTTCTATTTTCTCAATGTATTAACTT
GGAAAAAAAATTTTAGCCTTATCTATCCCAACCTATCCCAATAGCAGTGGCTGAGTTTTG
CAGATTTAAAACTGAGATGATTGTATACAAGTCACTCTACTGAATTCCCTTTTCTAAAGT
AACTTCTTCAAAGCTACGAAAATGTGTCAAAGTGCACATTGTGTAGGTAAAATTCTTAAG
GATTGTTCTCAGTCCCTCAGTTCTCCAGTGGACTGTTAAATACTGATTCAGTTAAAGGAA
ATTATCTTTTACATACTTTTTTTGTAGAAGTGGATGGATGGAATTGATTTTTGAATAGGC
ACTATTTAACTCATTACCTGGCACTAGCAACGTAATTTTTTTTTAGAAAAAGTAACTGGG
GAAAAAATGTGGGCCATGTATTAAATCACTGAAGAGGGATATATCTGACCAACAGATATT
GTCTTTGGGCATAAATGAAATGCAACACATGCACTTTGTGTGTCTCTTCTTAATTTAAAG
GAGGGTTGGAGGGATGTTTTCTTATCCTGTGTATAATTCTGTATTGCCTAGGATATTACA
GTAGAGCACTCAATTGTGGGTTTTGTGTATTGAGGATTTGTTTGAATTTCAAATTATAGT
TATGTACTGGGCGTTACAGACTTACAACAGCATAGTAAGTGGTAAGACTAGTGCAAAACA
TTTATTTCTGAAAATTAAAGACCATTATTGCCACCAAATCATTGTGACTGTTGCATATGC
ATTTTGCCTTTGTTAATTTTAAACATGATTTCAGTATCACTAGTGATCACCTTTGTTTCG
AGTGGACTGTTCTCTTAATTTTGTATATAACTTGTCTAAATTTTATGTACAGTCTTTTAT
AATAAACCATTCTCTATATGAAATTTTGAATACTGTAAAAGTCTAATGTGGATTGAAATG
TAGACATCACAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               420-535, + strand, RNAz p=0.511148

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               420-535, + strand, RNAz p=0.511148

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AF006516, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AF006516, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-969, gnl|bosTau2|chr13 (9261123-9260142)
               

               
               1-969, gnl|Hg17|chr10 (27076773-27075777)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-969, gnl|bosTau2|chr13 (9261123-9260142)
               

               
               1-969, gnl|Hg17|chr10 (27076773-27075777)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               ret (0.643666)
               

               
               fco (0.314416)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               lnt (0.284616)
               

               
               pla (0.267344)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               mga (0.160205)
               

               
               pty (0.142714)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               cty (0.10408)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.643666)
               

               
               fco (0.314416)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               lnt (0.284616)
               

               
               pla (0.267344)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               mga (0.160205)
               

               
               pty (0.142714)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               cty (0.10408)

	1-969, gnl\|bosTau2\|chr13 (9261123-9260142)
	1-969, gnl\|Hg17\|chr10 (27076773-27075777)

	ret (0.643666)
	fco (0.314416)
	liv (0.292569)
	lin (0.291206)
	lnt (0.284616)
	pla (0.267344)
	mgp (0.230681)
	sag (0.182715)
	fty (0.17584)
	mga (0.160205)
	pty (0.142714)
	ste (0.135208)
	ova (0.129132)
	tra (0.123092)
	cty (0.10408)