Non-Coding RNA Search

Ss1.1-rtra07_l20.5

Sequence:


               
               GGTATTGGTGATGGTTGTGAAAGAAGAAATTGGAGAATCACTCTCCAGACATCTGCAGAC
ATTTAATAGAGAAATGATTTATTCTACTGCGAAGGACTCTACCTCTTAAAAGCAGCAAAA
AGTAGAGGGAGGATAAATTTAGGAAAATAAACATCAACTTAGAAATATTATTCAAAGTAG
TCTTTGTGGAAGAGTCATTATTATGAACGTATAGATATTTGAGCAATTCAAAGCATAATA
ATTACTTAAAACTCCAGAGGGGGGTTTGGTCACTCTCCTGTGTTTTGTGTTTGACCCTGT
AAGAACACAGCAACTTGAGAATGAAATAGCAGCTAGTTAAGGATGCAAGAAGTGGGATAA
AAGAAAATAATTCCTGAAAGTATCCCCTTCTTACAAAGGATTGTCCTTAATTTCCGGAGT
TTGTGGGAAATAAAGCAAGAATCTGTATACCTTTGAGGCCAGAGTCATCGGTGGAAGAGA
GTAGAACTCATTGGATTATCCTAGTAGTAACTCAGATAAGCTGTTGAAGTAGAGAAAAGA
CATGTTTAATTTGGACTTACTATTTCTGGATCTGTTAATCAAGAAGTACACACCTTTTTT
TGTATAGTATTTGAAAACAATAAAAATGTTATGATTTGGGAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTATTGGTGATGGTTGTGAAAGAAGAAATTGGAGAATCACTCTCCAGACATCTGCAGAC
ATTTAATAGAGAAATGATTTATTCTACTGCGAAGGACTCTACCTCTTAAAAGCAGCAAAA
AGTAGAGGGAGGATAAATTTAGGAAAATAAACATCAACTTAGAAATATTATTCAAAGTAG
TCTTTGTGGAAGAGTCATTATTATGAACGTATAGATATTTGAGCAATTCAAAGCATAATA
ATTACTTAAAACTCCAGAGGGGGGTTTGGTCACTCTCCTGTGTTTTGTGTTTGACCCTGT
AAGAACACAGCAACTTGAGAATGAAATAGCAGCTAGTTAAGGATGCAAGAAGTGGGATAA
AAGAAAATAATTCCTGAAAGTATCCCCTTCTTACAAAGGATTGTCCTTAATTTCCGGAGT
TTGTGGGAAATAAAGCAAGAATCTGTATACCTTTGAGGCCAGAGTCATCGGTGGAAGAGA
GTAGAACTCATTGGATTATCCTAGTAGTAACTCAGATAAGCTGTTGAAGTAGAGAAAAGA
CATGTTTAATTTGGACTTACTATTTCTGGATCTGTTAATCAAGAAGTACACACCTTTTTT
TGTATAGTATTTGAAAACAATAAAAATGTTATGATTTGGGAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-640, gnl|bosTau2|chr14 (24495033-24494387)
               

               
               1-640, gnl|Hg17|chr8 (81110908-81110302)
               

               
               1-640, gnl|Mm7|chr3 (8935659-8935063)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-640, gnl|bosTau2|chr14 (24495033-24494387)
               

               
               1-640, gnl|Hg17|chr8 (81110908-81110302)
               

               
               1-640, gnl|Mm7|chr3 (8935659-8935063)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

Help | Less info


               
               sin (0.69979)
               

               
               pro (0.512033)
               

               
               sag (0.36543)
               

               
               fbs (0.350693)
               

               
               tra (0.246184)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               ldo (0.0970026)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.69979)
               

               
               pro (0.512033)
               

               
               sag (0.36543)
               

               
               fbs (0.350693)
               

               
               tra (0.246184)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               ldo (0.0970026)

	1-640, gnl\|bosTau2\|chr14 (24495033-24494387)
	1-640, gnl\|Hg17\|chr8 (81110908-81110302)
	1-640, gnl\|Mm7\|chr3 (8935659-8935063)

	sin (0.69979)
	pro (0.512033)
	sag (0.36543)
	fbs (0.350693)
	tra (0.246184)
	fco (0.157208)
	lun (0.150489)
	ski (0.146735)
	lnt (0.142308)
	ste (0.135208)
	ret (0.128733)
	ese (0.126502)
	bla (0.124347)
	ldo (0.0970026)