Ss1.1-rtra08_a21.5
|
GAGAGATAGATTACTTAAGCAGGTTAAAGAAGATAATCAGGAGATAGCCAGCATGGAGCG
ACAGTTAACAGATATAAAAGAAAAAATAAATCAATTTAGTGAAGAAATTAGACAACTTGA
CTTGGATTTAGAAGAACACCAAGGTGAAATGAATCAGAAGTATAAGGAGCTAAAAAAAAG
GGAGGAAAATATGGACACTTTTATGGAGACTTTTGAGGAAACTAAGAATCAGGAACTGGA
AAGGAAGGTACAGATAGAAGCTAACATTGTTGCACTTTTGGAGCACTCTAGTCGAAATAT
AAATCGTATGAAACAGATATCCTCTATCACTAATCAAGAGCTAAAGATGATGCAGGATGA
TCTCAATTTTAAATCTACTGAAATGCAGAAATCACAAAGTACAGCTCGGAATCTGACTTC
AGATAGTCAGCGTCTACAGTTGGATCTGCAGAAAATGGAGCTTCTGGAAAGTAAAATGAC
TGAAGAACAACAATCTCTAAAAAGCAAAATTAAGCAAATGATAAGTGATCTGGAGACATA
TAATGATTTGCCATCTTTAAAATCAGCAGGTGAAGAAAAGAAAAAGAAATTACATCAGGA
AAGAACAGTATTATCAACCCGCAGAAATGCCTTTAAAAAAATAATGGAGAAACTAAATGT
AGAATATGAGACGCTAAAAACACAATTACAAGAAAATGAGACACATTCTCAGCTTACAAA
TTTGGAGAGGAAGTGGCAACACCATGAGCAAAATAATTTTGTCATGAAAGAATTTATAGC
AACCAAGAGTCAAGAGAGTGATTACCAGCCAATTATGAAAAATGTGACAAAGCAGATTGC
AGAGTATAATAAAACCATCGTGGATGCTCTACATAGCATGAACAGAAACTGAGTCTTAAC
CAACTGCAAGTTTCTATAGAAATATCCTCTTGTTGCTAAACTTTGTACACGCCAACTGAA
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GAGAGATAGATTACTTAAGCAGGTTAAAGAAGATAATCAGGAGATAGCCAGCATGGAGCG
ACAGTTAACAGATATAAAAGAAAAAATAAATCAATTTAGTGAAGAAATTAGACAACTTGA
CTTGGATTTAGAAGAACACCAAGGTGAAATGAATCAGAAGTATAAGGAGCTAAAAAAAAG
GGAGGAAAATATGGACACTTTTATGGAGACTTTTGAGGAAACTAAGAATCAGGAACTGGA
AAGGAAGGTACAGATAGAAGCTAACATTGTTGCACTTTTGGAGCACTCTAGTCGAAATAT
AAATCGTATGAAACAGATATCCTCTATCACTAATCAAGAGCTAAAGATGATGCAGGATGA
TCTCAATTTTAAATCTACTGAAATGCAGAAATCACAAAGTACAGCTCGGAATCTGACTTC
AGATAGTCAGCGTCTACAGTTGGATCTGCAGAAAATGGAGCTTCTGGAAAGTAAAATGAC
TGAAGAACAACAATCTCTAAAAAGCAAAATTAAGCAAATGATAAGTGATCTGGAGACATA
TAATGATTTGCCATCTTTAAAATCAGCAGGTGAAGAAAAGAAAAAGAAATTACATCAGGA
AAGAACAGTATTATCAACCCGCAGAAATGCCTTTAAAAAAATAATGGAGAAACTAAATGT
AGAATATGAGACGCTAAAAACACAATTACAAGAAAATGAGACACATTCTCAGCTTACAAA
TTTGGAGAGGAAGTGGCAACACCATGAGCAAAATAATTTTGTCATGAAAGAATTTATAGC
AACCAAGAGTCAAGAGAGTGATTACCAGCCAATTATGAAAAATGTGACAAAGCAGATTGC
AGAGTATAATAAAACCATCGTGGATGCTCTACATAGCATGAACAGAAACTGAGTCTTAAC
CAACTGCAAGTTTCTATAGAAATATCCTCTTGTTGCTAAACTTTGTACACGCCAACTGAA
AAAAAAAAAAAA
|
|
gi|10439079|dbj|BAB15423.1| |
Protein identifier
|
gi|10439079|dbj|BAB15423.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
191-295, gnl|bosTau2|chr8 (10552396-10552291) |
|
191-295, gnl|Hg17|chr9 (27037264-27037369) |
|
191-295, gnl|Mm7|chr4 (94071778-94071883) |
| |
|
418-586, gnl|bosTau2|chr8 (10538998-10538830) |
|
418-586, gnl|canFam2|chr11 (48266432-48266612) |
|
418-586, gnl|dasNov1|scaffold_65636 (9976-10156) |
|
418-586, gnl|echTel1|scaffold_298697 (118171-118351) |
|
418-586, gnl|galGal2|chrZ_random (2650365-2650545) |
|
418-586, gnl|hg17|chr9 (27045595-27045775) |
|
418-586, gnl|Hg17|chr9 (27045602-27045770) |
|
418-586, gnl|loxAfr1|scaffold_37314 (6605-6785) |
|
418-586, gnl|mm7|chr4 (94078216-94078396) |
|
418-586, gnl|Mm7|chr4 (94078223-94078391) |
|
418-586, gnl|monDom2|scaffold_19 (24901702-24901882) |
|
418-586, gnl|panTro1|chr11 (27575769-27575949) |
|
418-586, gnl|rheMac2|chr15 (50038048-50037868) |
|
418-586, gnl|rn3|chr5 (115002220-115002400) |
| |
|
762-963, gnl|bosTau2|chr8 (10532588-10532388) |
|
762-963, gnl|Hg17|chr9 (27052604-27052813) |
|
762-963, gnl|Mm7|chr4 (94085545-94085725) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
191-295, gnl|bosTau2|chr8 (10552396-10552291) |
|
191-295, gnl|Hg17|chr9 (27037264-27037369) |
|
191-295, gnl|Mm7|chr4 (94071778-94071883) |
| |
|
418-586, gnl|bosTau2|chr8 (10538998-10538830) |
|
418-586, gnl|canFam2|chr11 (48266432-48266612) |
|
418-586, gnl|dasNov1|scaffold_65636 (9976-10156) |
|
418-586, gnl|echTel1|scaffold_298697 (118171-118351) |
|
418-586, gnl|galGal2|chrZ_random (2650365-2650545) |
|
418-586, gnl|hg17|chr9 (27045595-27045775) |
|
418-586, gnl|Hg17|chr9 (27045602-27045770) |
|
418-586, gnl|loxAfr1|scaffold_37314 (6605-6785) |
|
418-586, gnl|mm7|chr4 (94078216-94078396) |
|
418-586, gnl|Mm7|chr4 (94078223-94078391) |
|
418-586, gnl|monDom2|scaffold_19 (24901702-24901882) |
|
418-586, gnl|panTro1|chr11 (27575769-27575949) |
|
418-586, gnl|rheMac2|chr15 (50038048-50037868) |
|
418-586, gnl|rn3|chr5 (115002220-115002400) |
| |
|
762-963, gnl|bosTau2|chr8 (10532588-10532388) |
|
762-963, gnl|Hg17|chr9 (27052604-27052813) |
|
762-963, gnl|Mm7|chr4 (94085545-94085725) |
|
fce (0.271592) |
|
tra (0.246184) |
|
fco (0.157208) |
|
liv (0.146284) |
|
ret (0.128733) |
|
thg (0.126791) |
|
spc (0.113366) |
|
fce (0.271592) |
|
tra (0.246184) |
|
fco (0.157208) |
|
liv (0.146284) |
|
ret (0.128733) |
|
thg (0.126791) |
|
spc (0.113366) |
