Non-Coding RNA Search

Ss1.1-rtra08_i11.5

Sequence:


               
               TCCCCAATTACGAGGTTATTGATGAGCAGACACCCCTGTACTCAGCAGACCCAAACGCCA
TCGACACAGACTATTACCCTGGCGGTTACGACATTGAGAGTGACTTTCCGCCACCGCCGG
AGGACTTCCCTGCGCCTGACGAGCTGCCGCCCTTACCTCCAGAGTTCAGTGACCAGTTCG
AATCCATACACCCTCCCAGAGACATGCCCGCTGCAGGGAGCTTGGGTTCTTCTTCGAGAA
ACCGGCAGAGGTTCAACTTGAATCAGTATCTACCCAATTTCTATCCCGTCGATATGTCGG
AACCTCACAAAGCAGGCCCTGGTGAGAACAGTACTCGAAGGGAACCCTACGCCGCCTACC
CTCCGGGGTATCAAAGGACCTTCGAAGCCCCCACTGTAGAGAACCTGCCCATGTCCACGT
ACGCCTCCACGGCTTCCTGCTCCGATGTGTCAGCGTGCTGTGAAGTGGAGTCTGAGGTTA
TGATGAGTGACTATGAGAGTGGGGACGACGGCCACTTGGAAGAGGTGACCATCCCTCCGC
TCGATTCGCGACAGCATACGGAGGTCTAACGCTCAGACTCCCCCCAAAGTGCCTAATCGT
GAACCTAGAGATTCTAGCAGTGATCTCCTCCTGCATCGTTCTTTGCAGCAGTGCTTTTGC
GCTTTCTCCGGTGAGCTGAAATGGGCATGGCTGCACTGAGCCCCACGCCTCTTGACCTGT
TAGCCATTTCCTGTGTTCTAACCTACTGTCCTGGGATGAGATTTATGTCGGCTGTGCCAC
TTCTGTGCATCTCTTTGTATTTACATTTGTCTGTTAAAATAATGAGACGAAAATCAGCTC
TACTCTCTTGTTAGCATGACTCATGTATTTATATAGATTTGATTATTTTAATTTGTCTTT
TCTTTGTAAATTTTATGTACAGATTTGATTTTTTTCATAGTTTTAACTAGATTTTTCAAC
CTATTTTGTGCATCTTGTTTTTGACCGAATTTTGATGGTGTTAGCAACGTTACCCAGCAC
CCTGATTTTTTAATATAACCAGGGTTTCACGACATGTCCTTTTCAACTGAACTATGGCAT
TTCATTACTACATTTCAGTATAATCATTCTAGCTGTACATAGAACAGTTCTGATACATGG
ACATGTCATTCTGTACTTTAGAATTATAAACATTTTTCATTATTGGAAAGTGTAATGGGG
ACCTTCTGCATACTTGTTTAGAACCAAAACCACCATGACACAGTTTTTATAGTGTCTGTA
TATTTGTGATGCAATGGTCTTGTAAAGGTTTTTACTGAAAAACTACCATTAGCCAGTCTT
TCTTACTGACAATAAATTATTAATAAAATAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCCAATTACGAGGTTATTGATGAGCAGACACCCCTGTACTCAGCAGACCCAAACGCCA
TCGACACAGACTATTACCCTGGCGGTTACGACATTGAGAGTGACTTTCCGCCACCGCCGG
AGGACTTCCCTGCGCCTGACGAGCTGCCGCCCTTACCTCCAGAGTTCAGTGACCAGTTCG
AATCCATACACCCTCCCAGAGACATGCCCGCTGCAGGGAGCTTGGGTTCTTCTTCGAGAA
ACCGGCAGAGGTTCAACTTGAATCAGTATCTACCCAATTTCTATCCCGTCGATATGTCGG
AACCTCACAAAGCAGGCCCTGGTGAGAACAGTACTCGAAGGGAACCCTACGCCGCCTACC
CTCCGGGGTATCAAAGGACCTTCGAAGCCCCCACTGTAGAGAACCTGCCCATGTCCACGT
ACGCCTCCACGGCTTCCTGCTCCGATGTGTCAGCGTGCTGTGAAGTGGAGTCTGAGGTTA
TGATGAGTGACTATGAGAGTGGGGACGACGGCCACTTGGAAGAGGTGACCATCCCTCCGC
TCGATTCGCGACAGCATACGGAGGTCTAACGCTCAGACTCCCCCCAAAGTGCCTAATCGT
GAACCTAGAGATTCTAGCAGTGATCTCCTCCTGCATCGTTCTTTGCAGCAGTGCTTTTGC
GCTTTCTCCGGTGAGCTGAAATGGGCATGGCTGCACTGAGCCCCACGCCTCTTGACCTGT
TAGCCATTTCCTGTGTTCTAACCTACTGTCCTGGGATGAGATTTATGTCGGCTGTGCCAC
TTCTGTGCATCTCTTTGTATTTACATTTGTCTGTTAAAATAATGAGACGAAAATCAGCTC
TACTCTCTTGTTAGCATGACTCATGTATTTATATAGATTTGATTATTTTAATTTGTCTTT
TCTTTGTAAATTTTATGTACAGATTTGATTTTTTTCATAGTTTTAACTAGATTTTTCAAC
CTATTTTGTGCATCTTGTTTTTGACCGAATTTTGATGGTGTTAGCAACGTTACCCAGCAC
CCTGATTTTTTAATATAACCAGGGTTTCACGACATGTCCTTTTCAACTGAACTATGGCAT
TTCATTACTACATTTCAGTATAATCATTCTAGCTGTACATAGAACAGTTCTGATACATGG
ACATGTCATTCTGTACTTTAGAATTATAAACATTTTTCATTATTGGAAAGTGTAATGGGG
ACCTTCTGCATACTTGTTTAGAACCAAAACCACCATGACACAGTTTTTATAGTGTCTGTA
TATTTGTGATGCAATGGTCTTGTAAAGGTTTTTACTGAAAAACTACCATTAGCCAGTCTT
TCTTACTGACAATAAATTATTAATAAAATAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61820561|ref|XP_587063.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61820561|ref|XP_587063.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1006-1356, gnl|bosTau2|chr21 (39888174-39887797)
               

               
               1006-1356, gnl|Hg17|chr4 (187884461-187884098)
               

               
               1006-1356, gnl|Mm7|chr8 (43837452-43837799)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1006-1356, gnl|bosTau2|chr21 (39888174-39887797)
               

               
               1006-1356, gnl|Hg17|chr4 (187884461-187884098)
               

               
               1006-1356, gnl|Mm7|chr8 (43837452-43837799)

Expressed library(ies): 25 entry(ies)

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Expressed library(ies): 25 entry(ies)

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               sin (0.69979)
               

               
               liv (0.585137)
               

               
               amn (0.417711)
               

               
               tra (0.369276)
               

               
               cje (0.330469)
               

               
               isp (0.300752)
               

               
               lin (0.291206)
               

               
               pla (0.267344)
               

               
               kid (0.259471)
               

               
               tes (0.207814)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               clu (0.119646)
               

               
               spc (0.113366)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.69979)
               

               
               liv (0.585137)
               

               
               amn (0.417711)
               

               
               tra (0.369276)
               

               
               cje (0.330469)
               

               
               isp (0.300752)
               

               
               lin (0.291206)
               

               
               pla (0.267344)
               

               
               kid (0.259471)
               

               
               tes (0.207814)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               clu (0.119646)
               

               
               spc (0.113366)

	1006-1356, gnl\|bosTau2\|chr21 (39888174-39887797)
	1006-1356, gnl\|Hg17\|chr4 (187884461-187884098)
	1006-1356, gnl\|Mm7\|chr8 (43837452-43837799)

	sin (0.69979)
	liv (0.585137)
	amn (0.417711)
	tra (0.369276)
	cje (0.330469)
	isp (0.300752)
	lin (0.291206)
	pla (0.267344)
	kid (0.259471)
	tes (0.207814)
	sto (0.179824)
	gul (0.177588)
	fbs (0.175346)
	rec (0.17307)
	cki (0.165235)
	fco (0.157208)
	hyp (0.142837)
	csk (0.140746)
	che (0.136314)
	ova (0.129132)
	ret (0.128733)
	thg (0.126791)
	ese (0.126502)
	clu (0.119646)
	spc (0.113366)