Non-Coding RNA Search

Ss1.1-rtra08_o5.5

Sequence:


               
               AGTTATTAAGAAGCCTATGGATTTTTCCACAATCAGAGAGAAACTAAGTAGTGGACAGTA
TCCGAACCTTGAAACTTTTGCTCTAGATGTCAGGCTTGTTTTTGACAACTGTGAAACATT
TAATGAAGATGATTCTGACATAGGCAGAGCTGGCCACAGTATGAGGAAGTATTTTGAAAA
AAAATGGACAGATACTTTCAAAGTGAGCTGAAGTTATAATAATCTCTCTTTTTTTTTTCC
TTTTAAACAAGGACAAATGAGACCAGCAATGTGAACTGTATTTACATAAATGTGCAAGGC
ACATACATAATGACTTTTTTTTTCCTTAAAATAAGTATCACGAAAAAAAAAAGTATCAGA
AAATGATACCATTTTTAAAGGCTTCACTCCTACAACAACCAAGGCCCTTGGTTATTGGTT
TGTGTGATTTATCAGCTAATTTAGGTAGAACAGGGAAGCACACCCAAAGAATTTTCAAAG
AAAAGGGTGTTATAGTGCAATAGCAATTAAAATATATCAAATCGCACTGAATATTCAACA
CCAGAGCTCTAACGTGGGAAATGGTTCTCCTTTCCCTCTCAATAAATATCTATTTTTCAT
TTTTTTACTTTGTAGTTTATTTTTTAGTGAATGTATTTAATTTTATGAATTATTTATGAT
TAAACCACATCCAGAATCTTCGTTTTCTGTGAAAAGGAAGAACTAGAAAATTGCTTTAAA
TCTTGAAAATACAACAAGGAATGTTTTAAAATATAAAACAAAGCCAAGTTAAACTGTTTA
CACTGATGTGCTATAAAGCACCAAAAATAAACTTTACTGTAGAGTTACAAGTACATATAT
ATGTGTATATACATACATATACACACATATATATGTTGCTGTATCACTTGTGTAGTTAAA
TTGTATTTCAAGGCAGTGAAAAAAAATTGACATGTATATACTGTTCATTATTGTTTATAT
TAAGTCTTGTTTTAAATATGTATTATGTGTATATATTGTTTGCAGACATTATTGTTTATG
CCTTAGAAGGATTGTAGCATTTTATTTTAGTCCAAAAGTAATTACAGCTATACAGCTTGT
ACAGTAATTATCCTCTACCAACACTGTGGCGTCTCCTTGATCTTGGTAGTGCCTGCCTTT
GAAACAGGGTGTAGGGGATATTAGTTTTCCATTTTTCTATTTTGTTATATGATTTTAAGC
CACCAGGGCCTAAATTAAAGTATAATCATTTGTATCCATGTGGAATAAAATTGTGACAAT
TTCCTACGCACACAGTATTTTTTCATAGAAACATTTCCTTCCCATTTGCCTTGCCTCAGA
AATAAATTTAAAAGACATTTGTAACCACTGTGTTTTATCTACTGTGTGTTGTGGTGGCCT
GTTGGAGGCAAATAGATCAGAATTTTTTTTGTACCTATGTAAGAGTACTTGAAGTTTTAT
TTAAAATAAAATGTTGTGGAAAAGGTAGCATTCTTTTTTTTAGGAGTGTTATTTTTCACT
ACTATGTGTGGCACGGATACAATAAAAGACTTTTACAAACTAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTTATTAAGAAGCCTATGGATTTTTCCACAATCAGAGAGAAACTAAGTAGTGGACAGTA
TCCGAACCTTGAAACTTTTGCTCTAGATGTCAGGCTTGTTTTTGACAACTGTGAAACATT
TAATGAAGATGATTCTGACATAGGCAGAGCTGGCCACAGTATGAGGAAGTATTTTGAAAA
AAAATGGACAGATACTTTCAAAGTGAGCTGAAGTTATAATAATCTCTCTTTTTTTTTTCC
TTTTAAACAAGGACAAATGAGACCAGCAATGTGAACTGTATTTACATAAATGTGCAAGGC
ACATACATAATGACTTTTTTTTTCCTTAAAATAAGTATCACGAAAAAAAAAAGTATCAGA
AAATGATACCATTTTTAAAGGCTTCACTCCTACAACAACCAAGGCCCTTGGTTATTGGTT
TGTGTGATTTATCAGCTAATTTAGGTAGAACAGGGAAGCACACCCAAAGAATTTTCAAAG
AAAAGGGTGTTATAGTGCAATAGCAATTAAAATATATCAAATCGCACTGAATATTCAACA
CCAGAGCTCTAACGTGGGAAATGGTTCTCCTTTCCCTCTCAATAAATATCTATTTTTCAT
TTTTTTACTTTGTAGTTTATTTTTTAGTGAATGTATTTAATTTTATGAATTATTTATGAT
TAAACCACATCCAGAATCTTCGTTTTCTGTGAAAAGGAAGAACTAGAAAATTGCTTTAAA
TCTTGAAAATACAACAAGGAATGTTTTAAAATATAAAACAAAGCCAAGTTAAACTGTTTA
CACTGATGTGCTATAAAGCACCAAAAATAAACTTTACTGTAGAGTTACAAGTACATATAT
ATGTGTATATACATACATATACACACATATATATGTTGCTGTATCACTTGTGTAGTTAAA
TTGTATTTCAAGGCAGTGAAAAAAAATTGACATGTATATACTGTTCATTATTGTTTATAT
TAAGTCTTGTTTTAAATATGTATTATGTGTATATATTGTTTGCAGACATTATTGTTTATG
CCTTAGAAGGATTGTAGCATTTTATTTTAGTCCAAAAGTAATTACAGCTATACAGCTTGT
ACAGTAATTATCCTCTACCAACACTGTGGCGTCTCCTTGATCTTGGTAGTGCCTGCCTTT
GAAACAGGGTGTAGGGGATATTAGTTTTCCATTTTTCTATTTTGTTATATGATTTTAAGC
CACCAGGGCCTAAATTAAAGTATAATCATTTGTATCCATGTGGAATAAAATTGTGACAAT
TTCCTACGCACACAGTATTTTTTCATAGAAACATTTCCTTCCCATTTGCCTTGCCTCAGA
AATAAATTTAAAAGACATTTGTAACCACTGTGTTTTATCTACTGTGTGTTGTGGTGGCCT
GTTGGAGGCAAATAGATCAGAATTTTTTTTGTACCTATGTAAGAGTACTTGAAGTTTTAT
TTAAAATAAAATGTTGTGGAAAAGGTAGCATTCTTTTTTTTAGGAGTGTTATTTTTCACT
ACTATGTGTGGCACGGATACAATAAAAGACTTTTACAAACTAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|27503567|gb|AAH42646.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|27503567|gb|AAH42646.1|

Predicted RNA structure(s): 5 entry(ies)

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Predicted RNA structure(s): 5 entry(ies)

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               347-442, - strand, RNAz p=0.962305
               

               
               523-642, + strand, RNAz p=0.805493
               

               
               722-920, - strand, RNAz p=0.989579
               

               
               1041-1199, - strand, RNAz p=0.597365
               

               
               1280-1542, - strand, RNAz p=0.742781

Predicted RNA structure(s): 5 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               347-442, - strand, RNAz p=0.962305
               

               
               523-642, + strand, RNAz p=0.805493
               

               
               722-920, - strand, RNAz p=0.989579
               

               
               1041-1199, - strand, RNAz p=0.597365
               

               
               1280-1542, - strand, RNAz p=0.742781

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AB040909, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AB040909, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               58-1542, gnl|bosTau2|chr2 (10669034-10670501)
               

               
               58-1542, gnl|Hg17|chr2 (160002436-160000998)
               

               
               58-1542, gnl|Mm7|chr2 (59831351-59829837)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               58-1542, gnl|bosTau2|chr2 (10669034-10670501)
               

               
               58-1542, gnl|Hg17|chr2 (160002436-160000998)
               

               
               58-1542, gnl|Mm7|chr2 (59831351-59829837)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               cbr (1.0238)
               

               
               tra (0.369276)
               

               
               fty (0.351679)
               

               
               cte (0.29274)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               ret (0.128733)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               nbm (0.0993246)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (1.0238)
               

               
               tra (0.369276)
               

               
               fty (0.351679)
               

               
               cte (0.29274)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               ret (0.128733)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               nbm (0.0993246)

	347-442, - strand, RNAz p=0.962305
	523-642, + strand, RNAz p=0.805493
	722-920, - strand, RNAz p=0.989579
	1041-1199, - strand, RNAz p=0.597365
	1280-1542, - strand, RNAz p=0.742781

	58-1542, gnl\|bosTau2\|chr2 (10669034-10670501)
	58-1542, gnl\|Hg17\|chr2 (160002436-160000998)
	58-1542, gnl\|Mm7\|chr2 (59831351-59829837)

	cbr (1.0238)
	tra (0.369276)
	fty (0.351679)
	cte (0.29274)
	fcc (0.197785)
	nlu (0.191681)
	sag (0.182715)
	fbs (0.175346)
	eye (0.170503)
	fhi (0.169578)
	lin (0.145603)
	hyp (0.142837)
	ret (0.128733)
	pgl (0.118483)
	ecc (0.115035)
	cbl (0.114797)
	nbm (0.0993246)