Non-Coding RNA Search

Ss1.1-rtra09_h23.5

Sequence:


               
               TGCTTTTCTCAAGTTACAGCTCCCTTTAACAACCCGATTTCCCCAAGTCCTGCTGCATCA
CTCTAAAATTGGACTCACATGTACTTTTCAGGATAACGACAAATCTTTGATTAGCTACTC
TCCTTGCAACTTGATTGGCATCATCACTCCAGTTTGTGTTACAGGCTCTGAAGTGCTCAT
GACACATAATCAGCCCATCTGTGACTGTCCATACTGTATCACCCTTGCTTTTACCATGTT
CCTTTTTTTCCACCACTGCCTATCATGACTTCCCCCATGAGTTCACTTTCAGGAGTTACT
AAAACATGATACCATATTAACCTCTTGGCTTTCCCTTCATTTATTTTTCCTGCTTCTTCA
CTAGTTCTGAAATGATCAGTATTCATGTCCACATGGCATCTGGGATCCCCTGTGTGCAGA
TAACTACTTTTATACTTCCAAGCCCCTTTACCTTTGCTGTGATTGATGCCAACTGCCCCT
CCTGCATTCTGTTCTTTCTTCCTGCTGCATCAGTAAAGGCCTGCTCACTCTCTCCAGCAT
CTGTGCACATGTAAATTCGCCACAGCAGAATTAATCCTGATAGACTTTCTCTCACTCCAT
TGGAATTTTACTCAATGCCTACATCTAAGTTGCTCAAAGCCTTTAATAGCATCTGTTTTA
GATAGAGAACTAATCAACCCTGACATCAGTAACACATTCTAAATTTAAAGCCATCAGCTA
ATGCTGCATTCAGTAATCATTTTCATTAACCATCTTGTTTGGCTTGATTGGATTTGATGG
TGTAAACAAACAAAAAATGCAGTTTTTCTACAGTTAAGTAAATGTAAACAAAGTTAATAT
TTACAAATTCATTATTTAAGTCACATTAGTGGTGAAGAATTTAAGGATTTATTAGAAATG
TTTTTCTTATGATTCTAAATAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTTTTCTCAAGTTACAGCTCCCTTTAACAACCCGATTTCCCCAAGTCCTGCTGCATCA
CTCTAAAATTGGACTCACATGTACTTTTCAGGATAACGACAAATCTTTGATTAGCTACTC
TCCTTGCAACTTGATTGGCATCATCACTCCAGTTTGTGTTACAGGCTCTGAAGTGCTCAT
GACACATAATCAGCCCATCTGTGACTGTCCATACTGTATCACCCTTGCTTTTACCATGTT
CCTTTTTTTCCACCACTGCCTATCATGACTTCCCCCATGAGTTCACTTTCAGGAGTTACT
AAAACATGATACCATATTAACCTCTTGGCTTTCCCTTCATTTATTTTTCCTGCTTCTTCA
CTAGTTCTGAAATGATCAGTATTCATGTCCACATGGCATCTGGGATCCCCTGTGTGCAGA
TAACTACTTTTATACTTCCAAGCCCCTTTACCTTTGCTGTGATTGATGCCAACTGCCCCT
CCTGCATTCTGTTCTTTCTTCCTGCTGCATCAGTAAAGGCCTGCTCACTCTCTCCAGCAT
CTGTGCACATGTAAATTCGCCACAGCAGAATTAATCCTGATAGACTTTCTCTCACTCCAT
TGGAATTTTACTCAATGCCTACATCTAAGTTGCTCAAAGCCTTTAATAGCATCTGTTTTA
GATAGAGAACTAATCAACCCTGACATCAGTAACACATTCTAAATTTAAAGCCATCAGCTA
ATGCTGCATTCAGTAATCATTTTCATTAACCATCTTGTTTGGCTTGATTGGATTTGATGG
TGTAAACAAACAAAAAATGCAGTTTTTCTACAGTTAAGTAAATGTAAACAAAGTTAATAT
TTACAAATTCATTATTTAAGTCACATTAGTGGTGAAGAATTTAAGGATTTATTAGAAATG
TTTTTCTTATGATTCTAAATAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               2-237, gnl|bosTau2|chr24 (4090875-4091107)
               

               
               2-237, gnl|Hg17|chr18 (70402987-70403195)
               

               
               2-237, gnl|Mm7|chr18 (84960589-84960373)
               


               
               355-924, gnl|bosTau2|chr24 (4091739-4092302)
               

               
               355-924, gnl|Hg17|chr18 (70403332-70403917)
               

               
               355-924, gnl|Mm7|chr18 (84960205-84959657)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-237, gnl|bosTau2|chr24 (4090875-4091107)
               

               
               2-237, gnl|Hg17|chr18 (70402987-70403195)
               

               
               2-237, gnl|Mm7|chr18 (84960589-84960373)
               


               
               355-924, gnl|bosTau2|chr24 (4091739-4092302)
               

               
               355-924, gnl|Hg17|chr18 (70403332-70403917)
               

               
               355-924, gnl|Mm7|chr18 (84960205-84959657)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               kid (0.518941)
               

               
               mgm (0.360685)
               

               
               tra (0.246184)
               

               
               mga (0.160205)
               

               
               liv (0.146284)
               

               
               ret (0.128733)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.518941)
               

               
               mgm (0.360685)
               

               
               tra (0.246184)
               

               
               mga (0.160205)
               

               
               liv (0.146284)
               

               
               ret (0.128733)

	2-237, gnl\|bosTau2\|chr24 (4090875-4091107)
	2-237, gnl\|Hg17\|chr18 (70402987-70403195)
	2-237, gnl\|Mm7\|chr18 (84960589-84960373)

	355-924, gnl\|bosTau2\|chr24 (4091739-4092302)
	355-924, gnl\|Hg17\|chr18 (70403332-70403917)
	355-924, gnl\|Mm7\|chr18 (84960205-84959657)

	kid (0.518941)
	mgm (0.360685)
	tra (0.246184)
	mga (0.160205)
	liv (0.146284)
	ret (0.128733)