Non-Coding RNA Search

Ss1.1-rtra09_j12.5

Sequence:


               
               GAGTAATCTGTATTTTGCCTGAGACTTGAAGACATCTGAAGGCATATTACTCTTTTCAGG
CCCTAAATAACTATTGGGTATTTATTTGTCTCTAAATACCCTATTCCTCATTCTGAGATA
AACTTACTCTATTTATGGCATTTACAGCATTTTAGTTCCCAAGCAAAGGGAAATATGTAT
AATTAAACCTGTTCATGTACTAATCCTGAAATGCTAAATTTTATTTAAAATATTTTAAAA
TGCGACAATATACTGTCCCTCCTAAAAGCATTCAGAAAATTAATTTAACCTTAAAGACCA
TGGTTTAAAGGTAATTCATTCATAGTTTATAATTCCTCAGATGTTTTATGATAAAAACTG
CTTTAACATAAAAACCGTCTTCCTTTGCTCTTTTGCATAATAGTTTTAAATTTAAGACTG
CTCACTACTGTATGAGACTACTGGTAGATTTTCTTTGGTAGGTATGGGTGGGGAATGAAG
CACTTATTTATAGACTATAACACTCTGAAGGCCAATGTTATATCCAAAGCAATAATATCA
TTAAGTGATTCATTTCATTCAAAGCTAAGTTGTATAGGACAAAGAGATAAATCTATTCAC
AAAAAGCATATGAATTTTGAAATATATACAGAACAATGGTTCAAACATTATATACTTTAA
CCCTACTGGTGTATTTCTTATTTTTCTATCAGAAGATTCAAATATAGTTTTTTTTAACAA
AACAAAAATAGAATTTTACAATTCATTAATTTTAGAATGCAAGTATTATATTTAAAAGAT
TATAAAAATTGTTAAATTGCATCATTGTAAAAAAGGGATCACTTCAGAGAGAACAGCAGT
ATTCTACTGCATGTTAAAAAAAAAAAAATGCTCTTGGAGTTCCCGTCATGGTTCAGCGGT
TAACAAACCTGACTAGTATCCATGGGGATGCAGGTTTGATCCCTGGCCTCACTCAGTGGG
TTAAGGATTCGGTGTTGCCATGAGCTGTGGTATAGGTCACAGACGTGGCTTGGATCTGGC
ATTGCTGTGGCTGTGGCCGGCAGCTATAGCTCCAATTGGACCCCTACCCTGCAAATGTGC
CACAGGTGCAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGTAATCTGTATTTTGCCTGAGACTTGAAGACATCTGAAGGCATATTACTCTTTTCAGG
CCCTAAATAACTATTGGGTATTTATTTGTCTCTAAATACCCTATTCCTCATTCTGAGATA
AACTTACTCTATTTATGGCATTTACAGCATTTTAGTTCCCAAGCAAAGGGAAATATGTAT
AATTAAACCTGTTCATGTACTAATCCTGAAATGCTAAATTTTATTTAAAATATTTTAAAA
TGCGACAATATACTGTCCCTCCTAAAAGCATTCAGAAAATTAATTTAACCTTAAAGACCA
TGGTTTAAAGGTAATTCATTCATAGTTTATAATTCCTCAGATGTTTTATGATAAAAACTG
CTTTAACATAAAAACCGTCTTCCTTTGCTCTTTTGCATAATAGTTTTAAATTTAAGACTG
CTCACTACTGTATGAGACTACTGGTAGATTTTCTTTGGTAGGTATGGGTGGGGAATGAAG
CACTTATTTATAGACTATAACACTCTGAAGGCCAATGTTATATCCAAAGCAATAATATCA
TTAAGTGATTCATTTCATTCAAAGCTAAGTTGTATAGGACAAAGAGATAAATCTATTCAC
AAAAAGCATATGAATTTTGAAATATATACAGAACAATGGTTCAAACATTATATACTTTAA
CCCTACTGGTGTATTTCTTATTTTTCTATCAGAAGATTCAAATATAGTTTTTTTTAACAA
AACAAAAATAGAATTTTACAATTCATTAATTTTAGAATGCAAGTATTATATTTAAAAGAT
TATAAAAATTGTTAAATTGCATCATTGTAAAAAAGGGATCACTTCAGAGAGAACAGCAGT
ATTCTACTGCATGTTAAAAAAAAAAAAATGCTCTTGGAGTTCCCGTCATGGTTCAGCGGT
TAACAAACCTGACTAGTATCCATGGGGATGCAGGTTTGATCCCTGGCCTCACTCAGTGGG
TTAAGGATTCGGTGTTGCCATGAGCTGTGGTATAGGTCACAGACGTGGCTTGGATCTGGC
ATTGCTGTGGCTGTGGCCGGCAGCTATAGCTCCAATTGGACCCCTACCCTGCAAATGTGC
CACAGGTGCAAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               67-179, + strand, RNAz p=0.802185

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               67-179, + strand, RNAz p=0.802185

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               67-862, gnl|bosTau2|chr4 (20086204-20087015)
               

               
               67-862, gnl|Hg17|chr7 (76469535-76468745)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               67-862, gnl|bosTau2|chr4 (20086204-20087015)
               

               
               67-862, gnl|Hg17|chr7 (76469535-76468745)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               bla (0.248694)
               

               
               tra (0.246184)
               

               
               hea (0.204499)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               ldo (0.0970026)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.248694)
               

               
               tra (0.246184)
               

               
               hea (0.204499)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               ldo (0.0970026)

	67-862, gnl\|bosTau2\|chr4 (20086204-20087015)
	67-862, gnl\|Hg17\|chr7 (76469535-76468745)

	bla (0.248694)
	tra (0.246184)
	hea (0.204499)
	gul (0.177588)
	ton (0.1755)
	lun (0.150489)
	spl (0.143184)
	ste (0.135208)
	ova (0.129132)
	ldo (0.0970026)