Non-Coding RNA Search

Ss1.1-rtra09_j20.5

Sequence:


               
               TCTGCAGTAGGTTGTCTGGATCAAGAGAACACCCTGTCTCCTTAGATTGCTATTATGCTA
ATGTAATAAAATGAAACCTCATTGTTAGACATTGTTTAGACATAACTGTCAAAAGCTAAA
TGGAACAGGGGCTTCTGTAGTGGCCCAGCAGCAGCTTTGTATCAAGGTATGCGAAGCACC
TACCTGGTGTATGTATAACAGGTATTCCATTATGCTAGAGTTCCTTTCTTTTCTTTCGGC
CTGACAACCCTTAAAGTTTATTTATCACATTTCTAAATAAGCATGATTAGGGCTTCCTTT
TACTTCGCTGTGATGGAGATGACACTGCCTGTTATCTCTGGCCCCAAACATCCTGTGCCA
TGCCATTCCATACTATGAAGAATGAGAGAAAAGGATCCACAGCTTAAAGGAAGGTGGTTG
TCAGTGGACCTAAATATACACAAACCAGGAATTCTGTTCAGCTTTTCAATTTTTCCCTGC
ATATAACTAAGCCTTTGGCTGGACTAATTGGCTATATACTCCTAGCATAACATAAATGAG
TATCTTGATTAGTCTAATAGTTTCAAGAAAACTTTGGGGCCAGTATTGTTATCACTTAGC
CTCTTTGTGTTTGTTATGATGCAATTATAAAAGTACATAGAAACATCATGACAGTGATGA
CTGATTTGTACG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGCAGTAGGTTGTCTGGATCAAGAGAACACCCTGTCTCCTTAGATTGCTATTATGCTA
ATGTAATAAAATGAAACCTCATTGTTAGACATTGTTTAGACATAACTGTCAAAAGCTAAA
TGGAACAGGGGCTTCTGTAGTGGCCCAGCAGCAGCTTTGTATCAAGGTATGCGAAGCACC
TACCTGGTGTATGTATAACAGGTATTCCATTATGCTAGAGTTCCTTTCTTTTCTTTCGGC
CTGACAACCCTTAAAGTTTATTTATCACATTTCTAAATAAGCATGATTAGGGCTTCCTTT
TACTTCGCTGTGATGGAGATGACACTGCCTGTTATCTCTGGCCCCAAACATCCTGTGCCA
TGCCATTCCATACTATGAAGAATGAGAGAAAAGGATCCACAGCTTAAAGGAAGGTGGTTG
TCAGTGGACCTAAATATACACAAACCAGGAATTCTGTTCAGCTTTTCAATTTTTCCCTGC
ATATAACTAAGCCTTTGGCTGGACTAATTGGCTATATACTCCTAGCATAACATAAATGAG
TATCTTGATTAGTCTAATAGTTTCAAGAAAACTTTGGGGCCAGTATTGTTATCACTTAGC
CTCTTTGTGTTTGTTATGATGCAATTATAAAAGTACATAGAAACATCATGACAGTGATGA
CTGATTTGTACG

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               155-670, gnl|bosTau2|chr20 (20964898-20965396)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               155-670, gnl|bosTau2|chr20 (20964898-20965396)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

Help | Less info


               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               cbe (0.239234)
               

               
               eye (0.170503)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               clu (0.119646)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               cbe (0.239234)
               

               
               eye (0.170503)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               clu (0.119646)

	ret (0.257467)
	thg (0.253582)
	cbe (0.239234)
	eye (0.170503)
	ski (0.146735)
	lin (0.145603)
	pla (0.133672)
	lyg (0.133103)
	kid (0.129735)
	sug (0.127291)
	tra (0.123092)
	clu (0.119646)