Non-Coding RNA Search

Ss1.1-rtra09_n10.5

Sequence:


               
               ACTACTTCATCCAGTAGGTCCAGATGATGAAAATACTGAAACAGTGGAGGAATTTGAATT
CTCATTTTCTGATGAAGAAGTTTCAGAAAAAGCAAAGGATTGTAGATCAGAAAATGAAGG
TGGACAAAACTTTAAAGATGAATTACCTGACTGCTGTGGCAGAGCACCTGAAGACCTTGA
ACAAATAAAGGAAGACAATTTGTCAGAGGCGAGTGCTGATCCACATGGTTTGGAAATGAC
TGAGTTCAACCAACCTTTAGAAGAAATAAAAGGGCAGCTTGTTGAAAACAATTCTGTAAC
TGAGTTTTCTGGGGAGAATAACAGAACTGAAAATGACACCAGGCAAGGTTGTAAGAAGGA
TCAAGAAGGCATCCTCAAGGGCTCTGAGGAGTATGAAGATGAGTGCCCTAATCTAATTGC
CTTGTCATCATTAAACAGAGAATTCAGGCCTTTCAGAGATCAAAATATGGAAGAAGATAT
TAATCAACATAGAATAAGAACTCTGAGTTTTACTTCTATGAGCAGTGTTTTGAGCTGTTC
AACAATTCCTCCGGAATTGGTGAAACAGAAGGTGAGACGTCAGTTGACAAAACAGCAAAA
ATCAGCTGTCAGACGTCGATTGCAGAAAGGAGAAGCAAATATATTTACCAAGCAACGGAG
AGAAAACATGCAGAATATTAAATCAAGCTTGGAAGCAGCTACCTTTTGGGGAGAGTAATA
TTATTCAAGATCTTGACTATTTTTCATTCAGCTACTCTGATCCCTTCTTAAGCCACCTTC
AGTATTTTTTGGACCAAGACAGATACATATAAATAGATAAATAAACCCTCTTTCTTGATA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTACTTCATCCAGTAGGTCCAGATGATGAAAATACTGAAACAGTGGAGGAATTTGAATT
CTCATTTTCTGATGAAGAAGTTTCAGAAAAAGCAAAGGATTGTAGATCAGAAAATGAAGG
TGGACAAAACTTTAAAGATGAATTACCTGACTGCTGTGGCAGAGCACCTGAAGACCTTGA
ACAAATAAAGGAAGACAATTTGTCAGAGGCGAGTGCTGATCCACATGGTTTGGAAATGAC
TGAGTTCAACCAACCTTTAGAAGAAATAAAAGGGCAGCTTGTTGAAAACAATTCTGTAAC
TGAGTTTTCTGGGGAGAATAACAGAACTGAAAATGACACCAGGCAAGGTTGTAAGAAGGA
TCAAGAAGGCATCCTCAAGGGCTCTGAGGAGTATGAAGATGAGTGCCCTAATCTAATTGC
CTTGTCATCATTAAACAGAGAATTCAGGCCTTTCAGAGATCAAAATATGGAAGAAGATAT
TAATCAACATAGAATAAGAACTCTGAGTTTTACTTCTATGAGCAGTGTTTTGAGCTGTTC
AACAATTCCTCCGGAATTGGTGAAACAGAAGGTGAGACGTCAGTTGACAAAACAGCAAAA
ATCAGCTGTCAGACGTCGATTGCAGAAAGGAGAAGCAAATATATTTACCAAGCAACGGAG
AGAAAACATGCAGAATATTAAATCAAGCTTGGAAGCAGCTACCTTTTGGGGAGAGTAATA
TTATTCAAGATCTTGACTATTTTTCATTCAGCTACTCTGATCCCTTCTTAAGCCACCTTC
AGTATTTTTTGGACCAAGACAGATACATATAAATAGATAAATAAACCCTCTTTCTTGATA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9NVB0_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9NVB0_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               320-439, - strand, RNAz p=0.77896
               

               
               542-660, - strand, RNAz p=0.884138

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               320-439, - strand, RNAz p=0.77896
               

               
               542-660, - strand, RNAz p=0.884138

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-456, gnl|bosTau2|chr7 (60091557-60091105)
               

               
               1-456, gnl|Hg17|chr5 (96529382-96528927)
               

               
               1-456, gnl|Mm7|chr17 (15558244-15558684)
               


               
               542-756, gnl|bosTau2|chr21 (19704783-19704992)
               

               
               542-756, gnl|Hg17|chr5 (96524698-96524485)
               

               
               542-756, gnl|Mm7|chr17 (15564566-15564765)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-456, gnl|bosTau2|chr7 (60091557-60091105)
               

               
               1-456, gnl|Hg17|chr5 (96529382-96528927)
               

               
               1-456, gnl|Mm7|chr17 (15558244-15558684)
               


               
               542-756, gnl|bosTau2|chr21 (19704783-19704992)
               

               
               542-756, gnl|Hg17|chr5 (96524698-96524485)
               

               
               542-756, gnl|Mm7|chr17 (15564566-15564765)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               sag (0.36543)
               

               
               cbl (0.229595)
               

               
               mcp (0.170648)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.36543)
               

               
               cbl (0.229595)
               

               
               mcp (0.170648)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)

	320-439, - strand, RNAz p=0.77896
	542-660, - strand, RNAz p=0.884138

	1-456, gnl\|bosTau2\|chr7 (60091557-60091105)
	1-456, gnl\|Hg17\|chr5 (96529382-96528927)
	1-456, gnl\|Mm7\|chr17 (15558244-15558684)

	542-756, gnl\|bosTau2\|chr21 (19704783-19704992)
	542-756, gnl\|Hg17\|chr5 (96524698-96524485)
	542-756, gnl\|Mm7\|chr17 (15564566-15564765)

	sag (0.36543)
	cbl (0.229595)
	mcp (0.170648)
	isp (0.150376)
	bfe (0.149858)
	ski (0.146735)
	liv (0.146284)
	spl (0.143184)
	csk (0.140746)
	kid (0.129735)
	ret (0.128733)
	thg (0.126791)
	tra (0.123092)
	pgl (0.118483)