Non-Coding RNA Search

Ss1.1-rtra09_n7.5

Sequence:


               
               GCTTGGTAGTTAAGACTTGTTATGTGAATGGAGAGAATGGTTGGAATGATGAAATTTCTA
AGAGCCATATTGAATGTGTTGGTAAGACTGAAGAAGAAGCTACTATTACTGTTTCTTTTC
ATAGTGGTCTCCGGGATAGAGTTTATTTTAGGGGAGTGGAAAAGCAAGGTTTTTGGTAGG
ACATAAACTAAGTCTAATTAGGGTTGAGATGCTACTTTATTTGTATCCCTAGCAACCGTG
TGCAATAAATAAAAGTGAAAGGAAATATTTTGGAGGGAATTGGGAATGCAGAAAATGAAT
AGCTTATAAGCTTTTACTTGGTATATATTTAATGAAATTCATGGTTTTTTTTAAAGGTAT
TTGAAATATCTTACCAAGAAATACCTTAAGAAGAACAATCTTCGCGATTGGCTTCGTGTG
GTTGCATCTGACAAGGAGACCTATGAACTTCGTTACTTCCAGATTAGTCAAGATGAAGAT
GGATCAGAGTCTGAGGACTAAATGAAGCTGTCTTTTATAGGGCTTCGTTGCTAATAAAAC
AAATGAAGCAAGAGAAAGAGAAATTTAGAAATTGACCTTTAGTTTATCAATGAATAAAAA
ACATTGTACTCTGTTAAGGATTCATCTCTTTATTTATTTAAGTGTATATTGTTGACATGG
TGCCGACTTTCCTTTCTGTAGGCCATATGTAAATAGCTTATAGCTAGTGGAATTGTATCC
AGTATTTTTTATATGTATTGATTTTACAAATGTCCTTTTTTTACACTAGTGTATTGTATA
GGAAAAAGGCACAATTTTGGGTGTAATTTTATATAATAAAGTATATAAATTCTCTTGAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTGGTAGTTAAGACTTGTTATGTGAATGGAGAGAATGGTTGGAATGATGAAATTTCTA
AGAGCCATATTGAATGTGTTGGTAAGACTGAAGAAGAAGCTACTATTACTGTTTCTTTTC
ATAGTGGTCTCCGGGATAGAGTTTATTTTAGGGGAGTGGAAAAGCAAGGTTTTTGGTAGG
ACATAAACTAAGTCTAATTAGGGTTGAGATGCTACTTTATTTGTATCCCTAGCAACCGTG
TGCAATAAATAAAAGTGAAAGGAAATATTTTGGAGGGAATTGGGAATGCAGAAAATGAAT
AGCTTATAAGCTTTTACTTGGTATATATTTAATGAAATTCATGGTTTTTTTTAAAGGTAT
TTGAAATATCTTACCAAGAAATACCTTAAGAAGAACAATCTTCGCGATTGGCTTCGTGTG
GTTGCATCTGACAAGGAGACCTATGAACTTCGTTACTTCCAGATTAGTCAAGATGAAGAT
GGATCAGAGTCTGAGGACTAAATGAAGCTGTCTTTTATAGGGCTTCGTTGCTAATAAAAC
AAATGAAGCAAGAGAAAGAGAAATTTAGAAATTGACCTTTAGTTTATCAATGAATAAAAA
ACATTGTACTCTGTTAAGGATTCATCTCTTTATTTATTTAAGTGTATATTGTTGACATGG
TGCCGACTTTCCTTTCTGTAGGCCATATGTAAATAGCTTATAGCTAGTGGAATTGTATCC
AGTATTTTTTATATGTATTGATTTTACAAATGTCCTTTTTTTACACTAGTGTATTGTATA
GGAAAAAGGCACAATTTTGGGTGTAATTTTATATAATAAAGTATATAAATTCTCTTGAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47206194|emb|CAF91864.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47206194|emb|CAF91864.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               346-675, gnl|bosTau2|chr10 (30452347-30452021)
               

               
               346-675, gnl|Hg17|chr3 (172068514-172066703)
               


               
               700-848, gnl|bosTau2|chr21 (36880072-36880215)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               346-675, gnl|bosTau2|chr10 (30452347-30452021)
               

               
               346-675, gnl|Hg17|chr3 (172068514-172066703)
               


               
               700-848, gnl|bosTau2|chr21 (36880072-36880215)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               lin (0.145603)
               

               
               kid (0.129735)
               

               
               tra (0.123092)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)
               

               
               kid (0.129735)
               

               
               tra (0.123092)

	346-675, gnl\|bosTau2\|chr10 (30452347-30452021)
	346-675, gnl\|Hg17\|chr3 (172068514-172066703)

	700-848, gnl\|bosTau2\|chr21 (36880072-36880215)