Ss1.1-rtra10_c14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAAGGCCTTGACTACGGAGGAGTTGCCAGGGAGTGGTTATATCTCTTGTCACATGAAAT GTTGAATCCTTACTACGGCCTCTTCCAGTATTCAAGAGATGATATCTATACATTGCAGAT CAATCCTGATTCTGCAGTTAATCCGGAACATTTATCATATTTCCACTTTGTTGGACGAAT AATGGGAATGGCTGTGTTTCATGGACATTATATTGATGGTGGTTTCACGTTGCCTTTTTA TAAACAGTTGCTTGGAAAGTCCATTACTTTGGATGACATGGAGTTAGTTGATCCAGATCT TCATAACAGTTTAGTGTGGATACTTGAGAATGATATTACAGGTGTATTGGACCATACCTT CTGTGTGGAACATAATGCCTATGGTGAAATTATTCAGCATGAACTTAAGCCAAATGGCAA GAGTATCCCTGTCACTGAAGAAAATAAAAAAGAATATGTCAGGCTCTATGTGAACTGGAG ATTTTTACGAGGCATTGAGGCGCAGTTCCTGGCTCTGCAGAAAGGATTTAATGAAGTAAT TCCACAGCATCTGCTGAAGACATTTGATGAGAAGGAGTTAGAGCTCATTATTTGTGGACT TGGAAAGATAGATGTGAATGACTGGAAGGTAAACACTCGATTAAAACACTGTACACCAGA CAGCAATGTTGTCAAGTGGTTCTGGAAGGCTGTGGAGTTTTTTGATGAAGAACGACGAGC ACGGTTACTTCAGTTTGTGACAGGCTCATCCCGGGTGCCTCTGCAGGGCTTCAAAGCTCT GCAAGGCGCTGCGGGCCCACGACTCTTTACAATACACCAGATTGATGCCTGCACTAACAA CCTGCCCAAAGCCCACACATGCTTCAATCGAATAGACATTCCGCCCTATGAAAGCTATGA AAAGTTGTATGAAAAGCTGCTAACAGCCATTGAAGAAACATGTGGATTTGCTGTGGAATG ACAACTCCAAGGATTGACCCAGGACTCTATTTATACCCCTGACCCACAGCCTCCTTGCAG CAGACTTTCAAGGAATGCTGAAATACAGGAAAATGCCCCCCCCCTTTAAAAAAATTGTAG GACACTGTGAGGGGAAAGGACAATTTTGAAATTCCTTTTCAAGGAAAAAAAAAAAAAAGA GGTCTTTATGCTTTGCCATGAGGCCACATTCAGCTGCTATTTAAAATTAATATCTTGAAC CTAAAGAATGCTGACTTTTCCTACATTTCCAGAGTTAGGCAGTATTCTACACTTAAAGAC TACTACTATTTTTATAAAAGCTAATCTATTCAAATCGCTTCACAGATTTCAAGTCTGTCA AACATCAAGACAACTTCAGCAGTCGGTACAAGTCACATTTCATTTTGATTGAGTACATGA TTTTGAACAGCTCCTGTACTTGTTCTTTGTAAAAAATAAAACGAAATAAAATTATTTTGA ATTATTCTAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAAGGCCTTGACTACGGAGGAGTTGCCAGGGAGTGGTTATATCTCTTGTCACATGAAAT GTTGAATCCTTACTACGGCCTCTTCCAGTATTCAAGAGATGATATCTATACATTGCAGAT CAATCCTGATTCTGCAGTTAATCCGGAACATTTATCATATTTCCACTTTGTTGGACGAAT AATGGGAATGGCTGTGTTTCATGGACATTATATTGATGGTGGTTTCACGTTGCCTTTTTA TAAACAGTTGCTTGGAAAGTCCATTACTTTGGATGACATGGAGTTAGTTGATCCAGATCT TCATAACAGTTTAGTGTGGATACTTGAGAATGATATTACAGGTGTATTGGACCATACCTT CTGTGTGGAACATAATGCCTATGGTGAAATTATTCAGCATGAACTTAAGCCAAATGGCAA GAGTATCCCTGTCACTGAAGAAAATAAAAAAGAATATGTCAGGCTCTATGTGAACTGGAG ATTTTTACGAGGCATTGAGGCGCAGTTCCTGGCTCTGCAGAAAGGATTTAATGAAGTAAT TCCACAGCATCTGCTGAAGACATTTGATGAGAAGGAGTTAGAGCTCATTATTTGTGGACT TGGAAAGATAGATGTGAATGACTGGAAGGTAAACACTCGATTAAAACACTGTACACCAGA CAGCAATGTTGTCAAGTGGTTCTGGAAGGCTGTGGAGTTTTTTGATGAAGAACGACGAGC ACGGTTACTTCAGTTTGTGACAGGCTCATCCCGGGTGCCTCTGCAGGGCTTCAAAGCTCT GCAAGGCGCTGCGGGCCCACGACTCTTTACAATACACCAGATTGATGCCTGCACTAACAA CCTGCCCAAAGCCCACACATGCTTCAATCGAATAGACATTCCGCCCTATGAAAGCTATGA AAAGTTGTATGAAAAGCTGCTAACAGCCATTGAAGAAACATGTGGATTTGCTGTGGAATG ACAACTCCAAGGATTGACCCAGGACTCTATTTATACCCCTGACCCACAGCCTCCTTGCAG CAGACTTTCAAGGAATGCTGAAATACAGGAAAATGCCCCCCCCCTTTAAAAAAATTGTAG GACACTGTGAGGGGAAAGGACAATTTTGAAATTCCTTTTCAAGGAAAAAAAAAAAAAAGA GGTCTTTATGCTTTGCCATGAGGCCACATTCAGCTGCTATTTAAAATTAATATCTTGAAC CTAAAGAATGCTGACTTTTCCTACATTTCCAGAGTTAGGCAGTATTCTACACTTAAAGAC TACTACTATTTTTATAAAAGCTAATCTATTCAAATCGCTTCACAGATTTCAAGTCTGTCA AACATCAAGACAACTTCAGCAGTCGGTACAAGTCACATTTCATTTTGATTGAGTACATGA TTTTGAACAGCTCCTGTACTTGTTCTTTGTAAAAAATAAAACGAAATAAAATTATTTTGA ATTATTCTAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 29-146, gnl|bosTau2|chr19 (42686902-42686785) | |
| 29-146, gnl|canFam2|chr9 (15490259-15490410) | |
| 29-146, gnl|danRer3|chr3 (20735465-20735599) | |
| 29-146, gnl|dasNov1|scaffold_2356 (22218-22349) | |
| 29-146, gnl|echTel1|scaffold_285065 (53828-53676) | |
| 29-146, gnl|fr1|chrUn (119978409-119978560) | |
| 29-146, gnl|galGal2|chr18 (6720309-6720460) | |
| 29-146, gnl|hg17|chr17 (59984177-59984329) | |
| 29-146, gnl|Hg17|chr17 (59984304-59984187) | |
| 29-146, gnl|loxAfr1|scaffold_7204 (14273-14121) | |
| 29-146, gnl|mm7|chr11 (106945100-106945246) | |
| 29-146, gnl|Mm7|chr11 (106945227-106945110) | |
| 29-146, gnl|monDom2|scaffold_18 (16896582-16896707) | |
| 29-146, gnl|oryCun1|scaffold_93485 (1196-1347) | |
| 29-146, gnl|panTro1|chr19 (45152898-45152746) | |
| 29-146, gnl|rheMac2|chr16 (60104660-60104811) | |
| 29-146, gnl|rn3|chr10 (96202220-96202366) | |
| 29-146, gnl|tetNig1|chr18 (1408480-1408598) | |
| 29-146, gnl|xenTro1|scaffold_48 (1716982-1716831) | |
| 326-463, gnl|bosTau2|chr19 (42684203-42684066) | |
| 326-463, gnl|canFam2|chr9 (15487259-15487418) | |
| 326-463, gnl|danRer3|chr3 (20732655-20732819) | |
| 326-463, gnl|dasNov1|scaffold_3851 (53714-53873) | |
| 326-463, gnl|echTel1|scaffold_309177 (38388-38229) | |
| 326-463, gnl|fr1|chrUn (119975997-119976147) | |
| 326-463, gnl|galGal2|chr18 (6719083-6719230) | |
| 326-463, gnl|hg17|chr17 (59981428-59981587) | |
| 326-463, gnl|Hg17|chr17 (59981572-59981435) | |
| 326-463, gnl|loxAfr1|scaffold_7204 (17334-17175) | |
| 326-463, gnl|mm7|chr11 (106939953-106940112) | |
| 326-463, gnl|Mm7|chr11 (106940097-106939960) | |
| 326-463, gnl|monDom2|scaffold_18 (16891323-16891482) | |
| 326-463, gnl|oryCun1|scaffold_209761 (60103-59949) | |
| 326-463, gnl|panTro1|chr19 (45155641-45155482) | |
| 326-463, gnl|rheMac2|chr16 (60101550-60101709) | |
| 326-463, gnl|rn3|chr10 (96197484-96197643) | |
| 326-463, gnl|tetNig1|chr18 (1407624-1407777) | |
| 326-463, gnl|xenTro1|scaffold_48 (1720639-1720486) | |
| 582-786, gnl|bosTau2|chr19 (42678417-42678213) | |
| 582-786, gnl|Hg17|chr17 (59974383-59974179) | |
| 582-786, gnl|Mm7|chr11 (106933853-106933649) | |
| 861-1449, gnl|bosTau2|chr19 (42676611-42676022) | |
| 861-1449, gnl|Hg17|chr17 (59972528-59971934) | |
| 861-1449, gnl|Mm7|chr11 (106931806-106931228) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 29-146, gnl|bosTau2|chr19 (42686902-42686785) | |
| 29-146, gnl|canFam2|chr9 (15490259-15490410) | |
| 29-146, gnl|danRer3|chr3 (20735465-20735599) | |
| 29-146, gnl|dasNov1|scaffold_2356 (22218-22349) | |
| 29-146, gnl|echTel1|scaffold_285065 (53828-53676) | |
| 29-146, gnl|fr1|chrUn (119978409-119978560) | |
| 29-146, gnl|galGal2|chr18 (6720309-6720460) | |
| 29-146, gnl|hg17|chr17 (59984177-59984329) | |
| 29-146, gnl|Hg17|chr17 (59984304-59984187) | |
| 29-146, gnl|loxAfr1|scaffold_7204 (14273-14121) | |
| 29-146, gnl|mm7|chr11 (106945100-106945246) | |
| 29-146, gnl|Mm7|chr11 (106945227-106945110) | |
| 29-146, gnl|monDom2|scaffold_18 (16896582-16896707) | |
| 29-146, gnl|oryCun1|scaffold_93485 (1196-1347) | |
| 29-146, gnl|panTro1|chr19 (45152898-45152746) | |
| 29-146, gnl|rheMac2|chr16 (60104660-60104811) | |
| 29-146, gnl|rn3|chr10 (96202220-96202366) | |
| 29-146, gnl|tetNig1|chr18 (1408480-1408598) | |
| 29-146, gnl|xenTro1|scaffold_48 (1716982-1716831) | |
| 326-463, gnl|bosTau2|chr19 (42684203-42684066) | |
| 326-463, gnl|canFam2|chr9 (15487259-15487418) | |
| 326-463, gnl|danRer3|chr3 (20732655-20732819) | |
| 326-463, gnl|dasNov1|scaffold_3851 (53714-53873) | |
| 326-463, gnl|echTel1|scaffold_309177 (38388-38229) | |
| 326-463, gnl|fr1|chrUn (119975997-119976147) | |
| 326-463, gnl|galGal2|chr18 (6719083-6719230) | |
| 326-463, gnl|hg17|chr17 (59981428-59981587) | |
| 326-463, gnl|Hg17|chr17 (59981572-59981435) | |
| 326-463, gnl|loxAfr1|scaffold_7204 (17334-17175) | |
| 326-463, gnl|mm7|chr11 (106939953-106940112) | |
| 326-463, gnl|Mm7|chr11 (106940097-106939960) | |
| 326-463, gnl|monDom2|scaffold_18 (16891323-16891482) | |
| 326-463, gnl|oryCun1|scaffold_209761 (60103-59949) | |
| 326-463, gnl|panTro1|chr19 (45155641-45155482) | |
| 326-463, gnl|rheMac2|chr16 (60101550-60101709) | |
| 326-463, gnl|rn3|chr10 (96197484-96197643) | |
| 326-463, gnl|tetNig1|chr18 (1407624-1407777) | |
| 326-463, gnl|xenTro1|scaffold_48 (1720639-1720486) | |
| 582-786, gnl|bosTau2|chr19 (42678417-42678213) | |
| 582-786, gnl|Hg17|chr17 (59974383-59974179) | |
| 582-786, gnl|Mm7|chr11 (106933853-106933649) | |
| 861-1449, gnl|bosTau2|chr19 (42676611-42676022) | |
| 861-1449, gnl|Hg17|chr17 (59972528-59971934) | |
| 861-1449, gnl|Mm7|chr11 (106931806-106931228) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| ski (0.29347) | |
| csk (0.281492) | |
| tra (0.246184) | |
| tes (0.207814) | |
| sag (0.182715) | |
| gul (0.177588) | |
| sin (0.174948) | |
| cki (0.165235) | |
| lun (0.150489) | |
| liv (0.146284) | |
| spl (0.143184) | |
| pty (0.142714) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| ret (0.128733) | |
| sug (0.127291) | |
| spc (0.113366) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ski (0.29347) | |
| csk (0.281492) | |
| tra (0.246184) | |
| tes (0.207814) | |
| sag (0.182715) | |
| gul (0.177588) | |
| sin (0.174948) | |
| cki (0.165235) | |
| lun (0.150489) | |
| liv (0.146284) | |
| spl (0.143184) | |
| pty (0.142714) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| ret (0.128733) | |
| sug (0.127291) | |
| spc (0.113366) |