Non-Coding RNA Search

Ss1.1-rtra10_e2.5

Sequence:


               
               AAAGTGCTCTCCCGGCTGGATTTTACCCACACTAGTGAAGAACTTCTGCAAGCGGAGGTG
ACTCATCTGGAAGGCAGCTTGGAATCTGTGAGTGCTACATGTAAACAGCTGAGCCAAGAG
CTAATGGAAAAATATGAAGAGCTGAAGAAGATGGAAGTGCATAACAATGAGTACAGGGCT
GAGATTAAGAAGTTGAAAGAACAGATTTTACAGGCCGAACAGAGTTATAGTTCTGTCCTA
GAAGGAATGAAGATGGAGATTTCCCAACTAACTCGAGAGTTACATCAGCGAGATATCACT
ATTGCTTCCACCAAAAGTTCTTCATCTGACATGGAAAGGCGACTTAAAGTAGAGATACAA
AAGGCAGAAGAAAAAGCAGTAGAGCATAAGGAGATTTTGAATCAGCTGGAGTCACTCAAA
TTAGAAAATCGTCATCTTTCTGAAATGGTGATGAAATTGGAATTGGGTTTACATGAGTGT
CCCTTGCCTCTGTCTCCTCTTGGTTCAATTGCTACAAGATTTTTGGAAGAGGAGGAACTG
AGGTCTCATCATATTCTCGAGCGCCTGGATGCCCATATTGAAGAACTAAAACGAGAGAGT
GAAAAGACAGTGAAACAATTCACAGCCCAAAAGTAGCCTCCTAAAAAATCACAAACATGG
AATAAAAATAAACACTGAGGAGTTACTGTCATCATGAAGTAGCGGCTCTTTGAAAGCATG
AACGTATAAAAACCGTGAAGATGAGACTGCTGTGAGGAATCTGAGAAACTGATACTTAGC
TCTGAGGTGTTTTCACTGCACTTGTTTGTTTGAAGGACATTTTCCAGCAGTAACTTGTAA
ATAAACCACTTTGCTAGACTTTTTTTCTCATATTAATATTTATTGTCATAAAATGAGACT
TTCTCTTGCTGACTTAAGCGTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGTGCTCTCCCGGCTGGATTTTACCCACACTAGTGAAGAACTTCTGCAAGCGGAGGTG
ACTCATCTGGAAGGCAGCTTGGAATCTGTGAGTGCTACATGTAAACAGCTGAGCCAAGAG
CTAATGGAAAAATATGAAGAGCTGAAGAAGATGGAAGTGCATAACAATGAGTACAGGGCT
GAGATTAAGAAGTTGAAAGAACAGATTTTACAGGCCGAACAGAGTTATAGTTCTGTCCTA
GAAGGAATGAAGATGGAGATTTCCCAACTAACTCGAGAGTTACATCAGCGAGATATCACT
ATTGCTTCCACCAAAAGTTCTTCATCTGACATGGAAAGGCGACTTAAAGTAGAGATACAA
AAGGCAGAAGAAAAAGCAGTAGAGCATAAGGAGATTTTGAATCAGCTGGAGTCACTCAAA
TTAGAAAATCGTCATCTTTCTGAAATGGTGATGAAATTGGAATTGGGTTTACATGAGTGT
CCCTTGCCTCTGTCTCCTCTTGGTTCAATTGCTACAAGATTTTTGGAAGAGGAGGAACTG
AGGTCTCATCATATTCTCGAGCGCCTGGATGCCCATATTGAAGAACTAAAACGAGAGAGT
GAAAAGACAGTGAAACAATTCACAGCCCAAAAGTAGCCTCCTAAAAAATCACAAACATGG
AATAAAAATAAACACTGAGGAGTTACTGTCATCATGAAGTAGCGGCTCTTTGAAAGCATG
AACGTATAAAAACCGTGAAGATGAGACTGCTGTGAGGAATCTGAGAAACTGATACTTAGC
TCTGAGGTGTTTTCACTGCACTTGTTTGTTTGAAGGACATTTTCCAGCAGTAACTTGTAA
ATAAACCACTTTGCTAGACTTTTTTTCTCATATTAATATTTATTGTCATAAAATGAGACT
TTCTCTTGCTGACTTAAGCGTGAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|28913749|gb|AAH48718.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|28913749|gb|AAH48718.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               191-394, gnl|bosTau2|chr1 (88314993-88315197)
               

               
               191-394, gnl|Hg17|chr3 (135751601-135751804)
               

               
               191-394, gnl|Mm7|chr9 (102287645-102287442)
               


               
               476-921, gnl|bosTau2|chr1 (88325543-88326005)
               

               
               476-921, gnl|Hg17|chr3 (135762915-135763368)
               

               
               476-921, gnl|Mm7|chr9 (102278338-102277955)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               191-394, gnl|bosTau2|chr1 (88314993-88315197)
               

               
               191-394, gnl|Hg17|chr3 (135751601-135751804)
               

               
               191-394, gnl|Mm7|chr9 (102287645-102287442)
               


               
               476-921, gnl|bosTau2|chr1 (88325543-88326005)
               

               
               476-921, gnl|Hg17|chr3 (135762915-135763368)
               

               
               476-921, gnl|Mm7|chr9 (102278338-102277955)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               tes (0.623441)
               

               
               fbs (0.350693)
               

               
               ret (0.257467)
               

               
               tra (0.246184)
               

               
               ece (0.229305)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               spl (0.143184)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.623441)
               

               
               fbs (0.350693)
               

               
               ret (0.257467)
               

               
               tra (0.246184)
               

               
               ece (0.229305)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               spl (0.143184)

	191-394, gnl\|bosTau2\|chr1 (88314993-88315197)
	191-394, gnl\|Hg17\|chr3 (135751601-135751804)
	191-394, gnl\|Mm7\|chr9 (102287645-102287442)

	476-921, gnl\|bosTau2\|chr1 (88325543-88326005)
	476-921, gnl\|Hg17\|chr3 (135762915-135763368)
	476-921, gnl\|Mm7\|chr9 (102278338-102277955)

	tes (0.623441)
	fbs (0.350693)
	ret (0.257467)
	tra (0.246184)
	ece (0.229305)
	rec (0.17307)
	mcp (0.170648)
	fco (0.157208)
	lun (0.150489)
	bfe (0.149858)
	ski (0.146735)
	spl (0.143184)