Non-Coding RNA Search

Ss1.1-rtra11_b21.5

Sequence:


               
               GAGTCCTCATGGAAACTAGTCAGATTCGTTTCTGCTGGGCCACAGTGGGAACTCCAGTAA
CCTTTTTTAAATTTTTTTTACTGAGCAATTTAAAATTTGGAAATATCTCAGATAATAATT
ACCAGAATGTTATTAGCAAGATGCTTATAGACATGTGGACTGACAATGGATGATGACTGT
ACTTTTCATCACTCCAGGGTTTCATATCCCTGTTTGATTAAAGTAATGAATGTAAGTTGA
AACTTACTTTGTCTTCCTTGAAATGATATATAAAGTGTCAGGACTTTTCTGAATAACTAA
TAGATTATTCTAGCCATGAACAGGGATAATTACTGACTTTTCATTCCAAGAAAAAATTTC
AGGCCAGTGTTAATTTTAAGCACAGTTATTCCTCCAGTGTAACGCAGATGGTATTTCCAG
GTTGAAAAAGCAGAAAGTATATTTTCATCCAAAGGAGATTTCTTTAAAGTGATGGTTTTA
AGAGTTATATAACCTAAAACAATGCTTCGTCCTCCATATTCCCTGGTATTAATAAACTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGTCCTCATGGAAACTAGTCAGATTCGTTTCTGCTGGGCCACAGTGGGAACTCCAGTAA
CCTTTTTTAAATTTTTTTTACTGAGCAATTTAAAATTTGGAAATATCTCAGATAATAATT
ACCAGAATGTTATTAGCAAGATGCTTATAGACATGTGGACTGACAATGGATGATGACTGT
ACTTTTCATCACTCCAGGGTTTCATATCCCTGTTTGATTAAAGTAATGAATGTAAGTTGA
AACTTACTTTGTCTTCCTTGAAATGATATATAAAGTGTCAGGACTTTTCTGAATAACTAA
TAGATTATTCTAGCCATGAACAGGGATAATTACTGACTTTTCATTCCAAGAAAAAATTTC
AGGCCAGTGTTAATTTTAAGCACAGTTATTCCTCCAGTGTAACGCAGATGGTATTTCCAG
GTTGAAAAAGCAGAAAGTATATTTTCATCCAAAGGAGATTTCTTTAAAGTGATGGTTTTA
AGAGTTATATAACCTAAAACAATGCTTCGTCCTCCATATTCCCTGGTATTAATAAACTGT

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               140-538, gnl|bosTau2|chr9 (23039655-23039262)
               

               
               140-538, gnl|canFam2|chr12 (69356722-69357159)
               

               
               140-538, gnl|dasNov1|scaffold_5894 (43282-42854)
               

               
               140-538, gnl|hg17|chr6 (109826087-109826527)
               

               
               140-538, gnl|Hg17|chr6 (109826526-109826126)
               

               
               140-538, gnl|loxAfr1|scaffold_41315 (10-425)
               

               
               140-538, gnl|oryCun1|scaffold_173077 (103766-104125)
               

               
               140-538, gnl|panTro1|chr5 (112139860-112140300)
               

               
               140-538, gnl|rheMac2|chr4 (154509413-154508978)
               

               
               140-538, gnl|rn3|chr20 (45496862-45496483)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               140-538, gnl|bosTau2|chr9 (23039655-23039262)
               

               
               140-538, gnl|canFam2|chr12 (69356722-69357159)
               

               
               140-538, gnl|dasNov1|scaffold_5894 (43282-42854)
               

               
               140-538, gnl|hg17|chr6 (109826087-109826527)
               

               
               140-538, gnl|Hg17|chr6 (109826526-109826126)
               

               
               140-538, gnl|loxAfr1|scaffold_41315 (10-425)
               

               
               140-538, gnl|oryCun1|scaffold_173077 (103766-104125)
               

               
               140-538, gnl|panTro1|chr5 (112139860-112140300)
               

               
               140-538, gnl|rheMac2|chr4 (154509413-154508978)
               

               
               140-538, gnl|rn3|chr20 (45496862-45496483)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               cut (0.169924)
               

               
               tra (0.123092)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)
               

               
               tra (0.123092)

	140-538, gnl\|bosTau2\|chr9 (23039655-23039262)
	140-538, gnl\|canFam2\|chr12 (69356722-69357159)
	140-538, gnl\|dasNov1\|scaffold_5894 (43282-42854)
	140-538, gnl\|hg17\|chr6 (109826087-109826527)
	140-538, gnl\|Hg17\|chr6 (109826526-109826126)
	140-538, gnl\|loxAfr1\|scaffold_41315 (10-425)
	140-538, gnl\|oryCun1\|scaffold_173077 (103766-104125)
	140-538, gnl\|panTro1\|chr5 (112139860-112140300)
	140-538, gnl\|rheMac2\|chr4 (154509413-154508978)
	140-538, gnl\|rn3\|chr20 (45496862-45496483)