Non-Coding RNA Search

Ss1.1-rtra11_f22.5

Sequence:


               
               TTTTTTAAAGAAGACAGCCCATGTATTTCTGCATAATGTTAAAGCTGATCTTTGTCTCTT
ACCCTTTAAAATTCCTTCAGCTTTTGGATGTTTTGGTGGTAATTGAATTCGATATGGAGA
TGATCTTTCTCAATTTCACACTTGTACTTAATGATTTTAAAATTAACCAAACTGCTTCTT
TAAAAGGAAAGAAATTAAGTCTACCTAATTCTGCCAGGCCCTCTTGCTACCTGTGTCAAC
TGTGCTTTTGTAACTATGGTAATGAAGTCAATAGATAGGAAACTAATTATTCTTTCCCCC
TTCTGAAATTGAGAAAACTTGCTAATAAGGGACTGAAACTTTAAAAGTCCCCCAAAGCAG
CCTACTTTTTGCCATGTTTACAGTGATTACTTTGTATTTGATTTCAAAAGAATTCTCAGA
TTCCACAATCTAGGGATGGTAAATTTATGTTCATCTTAATGCTTGGGAAAAGGATAGTAG
GGTGTGTGTACTGTTCTATTTAACATATAATCATATATTGTAAAGGCATCTGAGTTAGTT
TTGAGTTATATAAAGGAACTGCAAGTTTTGAAGATTTGAATCTTCTCATACATGCCGACA
GACCCTAAGAGACTTTGTTTTGCAAAACATTCTTCCTGCCAAATTAATGAAACTAACAGT
GGTTTTGATAACAACCTCCTAGCATTCAAACTGTTCTTTAAATTTTATTCAAACATACTG
ATTGTAGCAAGCAAGCCTTTGACTTTATTTTAGCAAGTTTGGCTTACTCTTCCCTCTTTC
ATGAAGTTTTTTTCTTCCACATTAATTAATAATACATAAAAATTTGAAACTGGAACTGTA
TTATACTTTTAACTAATCTCTTGTGGCTGTACTCATGTAATTTACTTAGGTTAATATGAG
AACTGGGGATTAAGTTATAGCTAATGTGCAAAACCACTTTGTATATTTGGTGATTTTGTA
ATGTAAGTGAATTGGTTAAATCTTATTTCACTGATACTGTTAATCATGCATATACAATTA
AAAGTTAAGCTACATTTCCCTTTAGAATTTGATTTATTGGATTTGAAGAACTTGACTTTA
TGTAATGGTGGTATACATGTGGAGTGGAGAACTTATTTTTCATTTTGTCAGAATAGGTAT
TCCTGATAAGCCTTCAGGAAATGTGCTGTTAGGAGATTTTTAATGTATAATAAAGACCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTAAAGAAGACAGCCCATGTATTTCTGCATAATGTTAAAGCTGATCTTTGTCTCTT
ACCCTTTAAAATTCCTTCAGCTTTTGGATGTTTTGGTGGTAATTGAATTCGATATGGAGA
TGATCTTTCTCAATTTCACACTTGTACTTAATGATTTTAAAATTAACCAAACTGCTTCTT
TAAAAGGAAAGAAATTAAGTCTACCTAATTCTGCCAGGCCCTCTTGCTACCTGTGTCAAC
TGTGCTTTTGTAACTATGGTAATGAAGTCAATAGATAGGAAACTAATTATTCTTTCCCCC
TTCTGAAATTGAGAAAACTTGCTAATAAGGGACTGAAACTTTAAAAGTCCCCCAAAGCAG
CCTACTTTTTGCCATGTTTACAGTGATTACTTTGTATTTGATTTCAAAAGAATTCTCAGA
TTCCACAATCTAGGGATGGTAAATTTATGTTCATCTTAATGCTTGGGAAAAGGATAGTAG
GGTGTGTGTACTGTTCTATTTAACATATAATCATATATTGTAAAGGCATCTGAGTTAGTT
TTGAGTTATATAAAGGAACTGCAAGTTTTGAAGATTTGAATCTTCTCATACATGCCGACA
GACCCTAAGAGACTTTGTTTTGCAAAACATTCTTCCTGCCAAATTAATGAAACTAACAGT
GGTTTTGATAACAACCTCCTAGCATTCAAACTGTTCTTTAAATTTTATTCAAACATACTG
ATTGTAGCAAGCAAGCCTTTGACTTTATTTTAGCAAGTTTGGCTTACTCTTCCCTCTTTC
ATGAAGTTTTTTTCTTCCACATTAATTAATAATACATAAAAATTTGAAACTGGAACTGTA
TTATACTTTTAACTAATCTCTTGTGGCTGTACTCATGTAATTTACTTAGGTTAATATGAG
AACTGGGGATTAAGTTATAGCTAATGTGCAAAACCACTTTGTATATTTGGTGATTTTGTA
ATGTAAGTGAATTGGTTAAATCTTATTTCACTGATACTGTTAATCATGCATATACAATTA
AAAGTTAAGCTACATTTCCCTTTAGAATTTGATTTATTGGATTTGAAGAACTTGACTTTA
TGTAATGGTGGTATACATGTGGAGTGGAGAACTTATTTTTCATTTTGTCAGAATAGGTAT
TCCTGATAAGCCTTCAGGAAATGTGCTGTTAGGAGATTTTTAATGTATAATAAAGACCAT

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               39-407, gnl|bosTau2|chr19 (47191855-47191484)
               

               
               39-407, gnl|Hg17|chr3 (57281071-57281425)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               39-407, gnl|bosTau2|chr19 (47191855-47191484)
               

               
               39-407, gnl|Hg17|chr3 (57281071-57281425)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

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               ret (0.3862)
               

               
               tra (0.369276)
               

               
               isp (0.300752)
               

               
               bfe (0.299715)
               

               
               liv (0.292569)
               

               
               kid (0.259471)
               

               
               cty (0.20816)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.3862)
               

               
               tra (0.369276)
               

               
               isp (0.300752)
               

               
               bfe (0.299715)
               

               
               liv (0.292569)
               

               
               kid (0.259471)
               

               
               cty (0.20816)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

	39-407, gnl\|bosTau2\|chr19 (47191855-47191484)
	39-407, gnl\|Hg17\|chr3 (57281071-57281425)

	ret (0.3862)
	tra (0.369276)
	isp (0.300752)
	bfe (0.299715)
	liv (0.292569)
	kid (0.259471)
	cty (0.20816)
	sin (0.174948)
	eye (0.170503)
	fco (0.157208)
	hyp (0.142837)
	eru (0.120048)
	ebs (0.118301)
	jca (0.11396)
	ldo (0.0970026)