Non-Coding RNA Search

Ss1.1-rtra11_h12.5

Sequence:


               
               CCGGGAGCCCGGCGTCCGGGACCAGTATCGCGCTTCCCGCCGAAACCGCTCAGACGCGCC
CCTGGCGGCCCGCGACTGCGAGCTCGCTGCCTCCGGGACGCAGCCCCGCGCGTCGGCCTT
CCGGACTCCAGGCCCCGGACCCGTCGTGGTTGATAACAAAAGGAGATGCACCTGGCCTTT
TCCCGGATTTCTCTGCGTTTTTAAGTGTCTGGTGTAATTGGGGGGTCCCGGCTGTAGACC
GCGCTTGCTTGAGGAAAATAGAAATCGGTCCTGCTCCTTTCAGCGGTCGGTTGGTTATCT
ACCCGAAGTTTCTTCGCTGTCTGGGCCTCTCTCCCCCCTCTGCGGCTGCTCTTAAAGCCA
CAAAAAGCTGCATCCAAGCTTGTTTGACGCCTGCCCTGACAAGTGTCCATGATGTTGGGC
CCTGAGGGAGGTGAAGGTTTTGTGGTCAAGCTCCGTGGCCTGCCCTGGTCCTGCTCTGTT
GAGGATGTGCAGAATTTCCTCTCCGACTGCACAATTCGTGATGGGGCCGCAGGTGTTCAT
TTTATCTACACTAGAGAAGGCAGGCAGAGTGGTGAGGCTTTTGTTGAACTTGAATCAGAA
GATGATGTAAAAATGGCCCTTAAAAAAGACAGGGAAAGCATGGGACACCGGTACATTGAG
GTGTTCAAGTCCCACAGAACCGAGATGGATTGGGTGTTGAAGCACAGTGGTCCAAATAGT
GCAGACACTGCCAATGATGGTTTCGTGCGGCTTCGAGGACTCCCATTTGGATGCACCAAG
GAAGAAATCGTTCAGTTCTTCTCAGGGTTGGAAATCGTGCCAAATGGGATCACACTGCCT
GTGGACCCCGAGGGCAAGATTACAGGGGAAGCCTTTGTGCAGTTTGCCTCACAGGAGTTA
GCTGAGAAGGCGCTAGGGAAGCACAAGGAGAGAATAGGGCACAGGTATATTGAGGTGTTC
AAGAGCAGTCAGGAAGAGGTTAGGTCATACTCAGATCCCCCTCTGAAGTTTATGTCCGTG
CAGCGACCAGGGCCCTATGACCGCCCCGGCACAGCCCGGAGGTATATCGGCATTGTCAAG
CAAGCAGGCCTGGAGAGGATGAGGTCTGGTGCCTACAGTGCAGGCTATGGGGGCTATGAG
GAGTACAGTGGCCTCAGTGATGGTTACGGCTTCACCACCGACCTATTTGGAAGAGACCTC
AGTTATTGTCTCTCTGGGATGTATGACCACAGGTATGGAGATGGCGAGTTTACTGTCCAG
AGCACCACTGGACACTGTGTCCACATGAGGGGGCTGCCATACAAAGCCACTGAGAACGAC
ATTTACAACTTCTTCTCTCCACTCAACCCCGTGAGAGTCCATATTGAGATTGGCCCTGAT
GGAAGAGTGACGGGCGAAGCTGATGTTGAGTTTGCCACCCACGATGAAGCTGTGGCAGCC
ATGTCCAAAGACAGGGCCAACATGCAACACAGATACATAGAACTTTTCTTGAATTCCACA
ACAGGGGCCAGCAATGGGGCATATAGCAGCCAGATGATGCAAGGCATGGGGGTGTCAACC
CAGTCCACATACAGTGGCCTTGAGAGCCAGTCCGTGAGTGGCTGTTACGGGGCTGGCTAC
GGTGGCCAGAACAGCATGGGTGGATATGACTAGTTTTGTAGTAGCTTTTGAGTTATTTCA
ATCAAATTTTCACAGGCAGCCAACAAGCAATGAAAAGCAGTTATTACTCTAGAGGAAGCT
GTGGGACCCATTTTGCACCATGAGTTTGTGAAATCTGGATTAAAAAAAATTACCTCTTCA
GTGTTTTCTCATGCAAACTTTCTTCTAGCATGTGATATTGAGTAAACTAAAACTATTTTC
AGCTTTTCTCGATTAACATTTTGGTAGTGTACTTCTGGAGTGATGTTATCTGAGTTATAA
GTAGTTTCAAGTATGTTAAATGTGGATCTTTTACACCACATCATCGTGAACACATTGGGG
AGGTGTGCTTTTTTGGAAAACTCAAGGTGCTAGATCCCTAATTCAAAGAGGAACATTTCT
CATGTTTGTTCATTCTAGTTTATTTTCATTTAAAATCTTTTAGGTTAAGTTTAAGCTTTT
TAAAAGTTAGTTTTGAAAATTGAGACACATTACTAATACTGTAGGAATTGGTGAGGCCTT
GACTTAAAACTTTCTTTGTACTGTGATTTCCTTTCGGGTGTATTTTGCTAAGTGAAACTT
GTTAAATTTTTTGTTAACTAAATTTTTTTCTTAAAATAAAAAGACTTTTTCACAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGGAGCCCGGCGTCCGGGACCAGTATCGCGCTTCCCGCCGAAACCGCTCAGACGCGCC
CCTGGCGGCCCGCGACTGCGAGCTCGCTGCCTCCGGGACGCAGCCCCGCGCGTCGGCCTT
CCGGACTCCAGGCCCCGGACCCGTCGTGGTTGATAACAAAAGGAGATGCACCTGGCCTTT
TCCCGGATTTCTCTGCGTTTTTAAGTGTCTGGTGTAATTGGGGGGTCCCGGCTGTAGACC
GCGCTTGCTTGAGGAAAATAGAAATCGGTCCTGCTCCTTTCAGCGGTCGGTTGGTTATCT
ACCCGAAGTTTCTTCGCTGTCTGGGCCTCTCTCCCCCCTCTGCGGCTGCTCTTAAAGCCA
CAAAAAGCTGCATCCAAGCTTGTTTGACGCCTGCCCTGACAAGTGTCCATGATGTTGGGC
CCTGAGGGAGGTGAAGGTTTTGTGGTCAAGCTCCGTGGCCTGCCCTGGTCCTGCTCTGTT
GAGGATGTGCAGAATTTCCTCTCCGACTGCACAATTCGTGATGGGGCCGCAGGTGTTCAT
TTTATCTACACTAGAGAAGGCAGGCAGAGTGGTGAGGCTTTTGTTGAACTTGAATCAGAA
GATGATGTAAAAATGGCCCTTAAAAAAGACAGGGAAAGCATGGGACACCGGTACATTGAG
GTGTTCAAGTCCCACAGAACCGAGATGGATTGGGTGTTGAAGCACAGTGGTCCAAATAGT
GCAGACACTGCCAATGATGGTTTCGTGCGGCTTCGAGGACTCCCATTTGGATGCACCAAG
GAAGAAATCGTTCAGTTCTTCTCAGGGTTGGAAATCGTGCCAAATGGGATCACACTGCCT
GTGGACCCCGAGGGCAAGATTACAGGGGAAGCCTTTGTGCAGTTTGCCTCACAGGAGTTA
GCTGAGAAGGCGCTAGGGAAGCACAAGGAGAGAATAGGGCACAGGTATATTGAGGTGTTC
AAGAGCAGTCAGGAAGAGGTTAGGTCATACTCAGATCCCCCTCTGAAGTTTATGTCCGTG
CAGCGACCAGGGCCCTATGACCGCCCCGGCACAGCCCGGAGGTATATCGGCATTGTCAAG
CAAGCAGGCCTGGAGAGGATGAGGTCTGGTGCCTACAGTGCAGGCTATGGGGGCTATGAG
GAGTACAGTGGCCTCAGTGATGGTTACGGCTTCACCACCGACCTATTTGGAAGAGACCTC
AGTTATTGTCTCTCTGGGATGTATGACCACAGGTATGGAGATGGCGAGTTTACTGTCCAG
AGCACCACTGGACACTGTGTCCACATGAGGGGGCTGCCATACAAAGCCACTGAGAACGAC
ATTTACAACTTCTTCTCTCCACTCAACCCCGTGAGAGTCCATATTGAGATTGGCCCTGAT
GGAAGAGTGACGGGCGAAGCTGATGTTGAGTTTGCCACCCACGATGAAGCTGTGGCAGCC
ATGTCCAAAGACAGGGCCAACATGCAACACAGATACATAGAACTTTTCTTGAATTCCACA
ACAGGGGCCAGCAATGGGGCATATAGCAGCCAGATGATGCAAGGCATGGGGGTGTCAACC
CAGTCCACATACAGTGGCCTTGAGAGCCAGTCCGTGAGTGGCTGTTACGGGGCTGGCTAC
GGTGGCCAGAACAGCATGGGTGGATATGACTAGTTTTGTAGTAGCTTTTGAGTTATTTCA
ATCAAATTTTCACAGGCAGCCAACAAGCAATGAAAAGCAGTTATTACTCTAGAGGAAGCT
GTGGGACCCATTTTGCACCATGAGTTTGTGAAATCTGGATTAAAAAAAATTACCTCTTCA
GTGTTTTCTCATGCAAACTTTCTTCTAGCATGTGATATTGAGTAAACTAAAACTATTTTC
AGCTTTTCTCGATTAACATTTTGGTAGTGTACTTCTGGAGTGATGTTATCTGAGTTATAA
GTAGTTTCAAGTATGTTAAATGTGGATCTTTTACACCACATCATCGTGAACACATTGGGG
AGGTGTGCTTTTTTGGAAAACTCAAGGTGCTAGATCCCTAATTCAAAGAGGAACATTTCT
CATGTTTGTTCATTCTAGTTTATTTTCATTTAAAATCTTTTAGGTTAAGTTTAAGCTTTT
TAAAAGTTAGTTTTGAAAATTGAGACACATTACTAATACTGTAGGAATTGGTGAGGCCTT
GACTTAAAACTTTCTTTGTACTGTGATTTCCTTTCGGGTGTATTTTGCTAAGTGAAACTT
GTTAAATTTTTTGTTAACTAAATTTTTTTCTTAAAATAAAAAGACTTTTTCACAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5E9J1_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5E9J1_BOVIN

Predicted RNA structure(s): 5 entry(ies)

More info

Predicted RNA structure(s): 5 entry(ies)

Help | Less info


               
               794-953, - strand, RNAz p=0.707124
               

               
               1074-1193, - strand, RNAz p=0.758232
               

               
               1314-1473, - strand, RNAz p=0.994853
               

               
               1514-1669, - strand, RNAz p=0.801087
               

               
               1940-2057, - strand, RNAz p=0.873904

Predicted RNA structure(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               794-953, - strand, RNAz p=0.707124
               

               
               1074-1193, - strand, RNAz p=0.758232
               

               
               1314-1473, - strand, RNAz p=0.994853
               

               
               1514-1669, - strand, RNAz p=0.801087
               

               
               1940-2057, - strand, RNAz p=0.873904

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

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               1-292, gnl|bosTau2|chr28 (8519281-8519573)
               

               
               1-292, gnl|Hg17|chr10 (43212143-43211904)
               


               
               356-2275, gnl|bosTau2|chr28 (8524019-8525931)
               

               
               356-2275, gnl|Hg17|chr10 (43203392-43201476)
               

               
               356-2275, gnl|Mm7|chr6 (117949167-117951080)
               


               
               2019-2236, gnl|bosTau2|chr13 (24772852-24772635)
               

               
               2019-2236, gnl|Hg17|chr10 (43201730-43201513)
               

               
               2019-2236, gnl|Mm7|chr4 (48357658-48357450)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-292, gnl|bosTau2|chr28 (8519281-8519573)
               

               
               1-292, gnl|Hg17|chr10 (43212143-43211904)
               


               
               356-2275, gnl|bosTau2|chr28 (8524019-8525931)
               

               
               356-2275, gnl|Hg17|chr10 (43203392-43201476)
               

               
               356-2275, gnl|Mm7|chr6 (117949167-117951080)
               


               
               2019-2236, gnl|bosTau2|chr13 (24772852-24772635)
               

               
               2019-2236, gnl|Hg17|chr10 (43201730-43201513)
               

               
               2019-2236, gnl|Mm7|chr4 (48357658-48357450)

Expressed library(ies): 78 entry(ies)

More info

Expressed library(ies): 78 entry(ies)

Help | Less info


               
               mgp (1.84544)
               

               
               spl (1.57503)
               

               
               lun (1.20391)
               

               
               cty (1.0408)
               

               
               rec (1.03842)
               

               
               pro (1.02407)
               

               
               vin (0.997672)
               

               
               lnt (0.996158)
               

               
               tra (0.984737)
               

               
               mga (0.96123)
               

               
               ste (0.946458)
               

               
               sme (0.91631)
               

               
               kid (0.908147)
               

               
               ova (0.903926)
               

               
               thg (0.887536)
               

               
               cje (0.826173)
               

               
               fat (0.737137)
               

               
               ski (0.733676)
               

               
               gul (0.710353)
               

               
               csk (0.70373)
               

               
               cbl (0.688784)
               

               
               ssp (0.677599)
               

               
               lyg (0.665513)
               

               
               fco (0.628832)
               

               
               bla (0.621736)
               

               
               tbr (0.616713)
               

               
               nbm (0.595948)
               

               
               liv (0.585137)
               

               
               pty (0.570858)
               

               
               cst (0.560146)
               

               
               sag (0.548145)
               

               
               mgm (0.541028)
               

               
               duo (0.518403)
               

               
               eye (0.511509)
               

               
               cut (0.509771)
               

               
               sug (0.509165)
               

               
               fhi (0.508733)
               

               
               jca (0.45584)
               

               
               bfe (0.449573)
               

               
               lin (0.436808)
               

               
               che (0.408942)
               

               
               aor (0.390549)
               

               
               ldo (0.38801)
               

               
               ret (0.3862)
               

               
               eep (0.367692)
               

               
               eru (0.360144)
               

               
               fbs (0.350693)
               

               
               sin (0.349895)
               

               
               med (0.348756)
               

               
               cki (0.330469)
               

               
               nco (0.323468)
               

               
               csp (0.322373)
               

               
               cte (0.29274)
               

               
               pla (0.267344)
               

               
               nmm (0.265604)
               

               
               ese (0.253004)
               

               
               clu (0.239292)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               pan (0.23596)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               fli (0.202881)
               

               
               jej (0.197844)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               cli (0.152812)
               

               
               isp (0.150376)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 78 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (1.84544)
               

               
               spl (1.57503)
               

               
               lun (1.20391)
               

               
               cty (1.0408)
               

               
               rec (1.03842)
               

               
               pro (1.02407)
               

               
               vin (0.997672)
               

               
               lnt (0.996158)
               

               
               tra (0.984737)
               

               
               mga (0.96123)
               

               
               ste (0.946458)
               

               
               sme (0.91631)
               

               
               kid (0.908147)
               

               
               ova (0.903926)
               

               
               thg (0.887536)
               

               
               cje (0.826173)
               

               
               fat (0.737137)
               

               
               ski (0.733676)
               

               
               gul (0.710353)
               

               
               csk (0.70373)
               

               
               cbl (0.688784)
               

               
               ssp (0.677599)
               

               
               lyg (0.665513)
               

               
               fco (0.628832)
               

               
               bla (0.621736)
               

               
               tbr (0.616713)
               

               
               nbm (0.595948)
               

               
               liv (0.585137)
               

               
               pty (0.570858)
               

               
               cst (0.560146)
               

               
               sag (0.548145)
               

               
               mgm (0.541028)
               

               
               duo (0.518403)
               

               
               eye (0.511509)
               

               
               cut (0.509771)
               

               
               sug (0.509165)
               

               
               fhi (0.508733)
               

               
               jca (0.45584)
               

               
               bfe (0.449573)
               

               
               lin (0.436808)
               

               
               che (0.408942)
               

               
               aor (0.390549)
               

               
               ldo (0.38801)
               

               
               ret (0.3862)
               

               
               eep (0.367692)
               

               
               eru (0.360144)
               

               
               fbs (0.350693)
               

               
               sin (0.349895)
               

               
               med (0.348756)
               

               
               cki (0.330469)
               

               
               nco (0.323468)
               

               
               csp (0.322373)
               

               
               cte (0.29274)
               

               
               pla (0.267344)
               

               
               nmm (0.265604)
               

               
               ese (0.253004)
               

               
               clu (0.239292)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               pan (0.23596)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               fli (0.202881)
               

               
               jej (0.197844)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               cli (0.152812)
               

               
               isp (0.150376)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	794-953, - strand, RNAz p=0.707124
	1074-1193, - strand, RNAz p=0.758232
	1314-1473, - strand, RNAz p=0.994853
	1514-1669, - strand, RNAz p=0.801087
	1940-2057, - strand, RNAz p=0.873904

	1-292, gnl\|bosTau2\|chr28 (8519281-8519573)
	1-292, gnl\|Hg17\|chr10 (43212143-43211904)

	356-2275, gnl\|bosTau2\|chr28 (8524019-8525931)
	356-2275, gnl\|Hg17\|chr10 (43203392-43201476)
	356-2275, gnl\|Mm7\|chr6 (117949167-117951080)

	2019-2236, gnl\|bosTau2\|chr13 (24772852-24772635)
	2019-2236, gnl\|Hg17\|chr10 (43201730-43201513)
	2019-2236, gnl\|Mm7\|chr4 (48357658-48357450)

	mgp (1.84544)
	spl (1.57503)
	lun (1.20391)
	cty (1.0408)
	rec (1.03842)
	pro (1.02407)
	vin (0.997672)
	lnt (0.996158)
	tra (0.984737)
	mga (0.96123)
	ste (0.946458)
	sme (0.91631)
	kid (0.908147)
	ova (0.903926)
	thg (0.887536)
	cje (0.826173)
	fat (0.737137)
	ski (0.733676)
	gul (0.710353)
	csk (0.70373)
	cbl (0.688784)
	ssp (0.677599)
	lyg (0.665513)
	fco (0.628832)
	bla (0.621736)
	tbr (0.616713)
	nbm (0.595948)
	liv (0.585137)
	pty (0.570858)
	cst (0.560146)
	sag (0.548145)
	mgm (0.541028)
	duo (0.518403)
	eye (0.511509)
	cut (0.509771)
	sug (0.509165)
	fhi (0.508733)
	jca (0.45584)
	bfe (0.449573)
	lin (0.436808)
	che (0.408942)
	aor (0.390549)
	ldo (0.38801)
	ret (0.3862)
	eep (0.367692)
	eru (0.360144)
	fbs (0.350693)
	sin (0.349895)
	med (0.348756)
	cki (0.330469)
	nco (0.323468)
	csp (0.322373)
	cte (0.29274)
	pla (0.267344)
	nmm (0.265604)
	ese (0.253004)
	clu (0.239292)
	cbe (0.239234)
	pgl (0.236967)
	pan (0.23596)
	ece (0.229305)
	nms (0.213858)
	fli (0.202881)
	jej (0.197844)
	col (0.195008)
	nlu (0.191681)
	cmu (0.186393)
	nep (0.183925)
	fty (0.17584)
	ill (0.175593)
	mcp (0.170648)
	cli (0.152812)
	isp (0.150376)
	hyp (0.142837)
	nca (0.136874)
	ecc (0.115035)
	spc (0.113366)
	eje (0.0988338)