Ss1.1-rtra11_h22.5
|
GAAAGCCATTGGCTGCGATGGACACTCCCTGGATACGGGCCAGAGGGCCTTTCTCCAGCC
GCCAGGCTTGGCCTCCAGCTGTTCTCAGTTACACACACGGCCTGGGGCCCCAGCAGCTGC
CACATCACTGGCTCCACTTCTGAAGGGGAATTCAGTCCTCAGACCCACTGCACCAAGTTA
GCATAGCGGTACAAGTTCCCCGCCAGGGCAGATATTGCTTTTGCGCGGAGTAGGCCAAGC
CTGGAAGCCATCCCGCCCTTCCGACCCAAAGCAAAACAGCAGCGTCTGAAGGGCCCGCAG
GAGGACTTTGACCACTGAGCCAACCATCCCTCTTTGGAACAGATCTTTGGCTCTGCGGAA
TTTAGTGGTATTTGTGACAAAATAGGAGGAAGAGAGATAGGGATTAAGGCCAAGGTGGTG
GGTCAGCGAAACCGAGAAAGAGACCTTTTCCCAGTGGAAGGCCTGGGGCGTGGTCAGAAT
CCGGACCAGACCTCACACAGCTGTCCCCTCCCGGAGACCTCTTGCTACAGACTTTGCTGG
GCCTCTTGCTTAAAGCCAAGGCAGCTCTTTGGAGTTTCTGTAAAGCTACTAATGACCAAT
TCAGTGGTGGAACACACCACACAAATTATGGGAACAAGGGGTAGACTTACAGCAGGGCTA
TATTAGGGGTATGTTATGAAGAACCTCTCTCTGTGCAATCAACGTTTAAGTACATAATGT
GAGAGAGATGGATATCGATCCTTGTAACACAATCTGTTCCTCTCCCTCTAAATTATACAC
GTTGAGGAAGTTTTATCTAATTTTCCACGTTGGGGATCAGGGCTCCCAGGTTCAGAGACA
ACTCTGGCTTTGACATCAGCTGGAGCGGCCGCTCTTCAGTAGGCCTGCTGGTTCTGCAAC
ACAGGCGAGGCAAGGCAATTCTGAAAGCTTTTTAACACACATGTGGACCCAAACCAAAGA
ACAGATCCTTAGGTGAAAGGTGCTATATAATTGTCAAGTATTAAGCATATCAGATGTCAG
TCACAACAGGAACAGAGTGTCTACATTCCCAGGAAAGGAAGAAAATTTCCATGAGAGAAA
TACAAATAATAGGTGATGGGCAGATATTTTCCTTAAAAAAAAATTAATCTAAAAACTCTT
GTGGTACCCAGTCAGATGGTAGTTGAGCTTGTCTGTTACCACAGGAGAATTTCCATATAG
GACATAGACGTATACAGTATGGTATTCCTGGTTAAGCAGGCATTGCTCTGGCCTGGCGCA
GCTATTTTAAGCCATCTCAGATTCTGCCTGAAGGGTTTTTATTTTTATTTTTGGTGGAAG
ACATTTCCTTTACCAATCTGAGAAGATCTGCCCTAGGGAGAATCTGAGATATCTTGCCTG
CTTTCCTTCTCCTAGCTCCCTCTTCATCTTATTTCTTAGATATTTTTCCTCTTGGGGAGT
TGTTATGCCACAATTGCTGGTATTTATGTAAAAGGATTATTACTAAGTACATTTCTTTAG
GTTCATTCTGGTTAAGGGGATGTTGAGGGTGGGCCACCAAATTGTCTGGGCTGGGGATAA
AGCAGTTGGCAAGCAAAAACTATGGGATGATGAACTTTTCAATTATGATTTAATGATCAC
ATGAGTATAGAAAGCTGTTTTGAGTGCTGAAACAGACTTACCTATCAGATATATCCAAAA
GAGATTCTATGTTAAAAAGTCAGACTATGACTGGAGTGAACCATGTATTCCCTTGTCTTT
TACTTTGTTTCTGTGACATTTATGTTTCATGTAACTTGCATTATGTTGGTGGGTTGTCCT
AGTACTGTATTTGGCTTCTTCTTTAATAGATTGATATTTCATATACTATAATTGTAAATA
TTTTGATACAAATGTTTATAACTCTAGGCATATAAAAACAGATTCTGATTCCCTTCACTG
TGTGAATGTTTTCTGTTGAAAAAATGGAGGATAAATATGGATACTAATGACACTCATTCC
TAATTAAGTTTTCAATCAGTTTGATTTGGATAACTTGCATTTATCCGAGATATTGAGCTA
CTTTCTGATAATGCATCAAGCATTTCTACCATAACTCTTTCACGCAACTGAATGTTGTTA
AGTATAGTTTTATCTTGCTTTAATTAAACTTCTTAAGCAAAAAAAAAGAAACTTCATAAG
CTAATACATTAGAGAAAGGTTATGATCTTGAATCAGAATGGCTTATGGCATTAAGGAATG
AGATACTTGTAAATTTTCTTTGAAACAGCCAACTCCTCTGTTGTGTCTTCACAATTCAAA
AGATATGCCTCACTGTACTTGCAGAAGCCCATTCACTGCATAAACTGGGGTGTATCTGTA
TGGGCTCTATGAGAGAAGGAAAGCTTTGAAGACTTCTGGGTTCAGTAAGGACTGGAATCA
AGGGTGGAAAGCAGAGTAGGTGCTATGTACCCCAGCATCATGTCACCACCAATACGATGA
GAATGGTTTTTGTGTGAAGTAGGCAACCTTTCAGTCCCTAGTGATCTTGGATGAAATGTA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GAAAGCCATTGGCTGCGATGGACACTCCCTGGATACGGGCCAGAGGGCCTTTCTCCAGCC
GCCAGGCTTGGCCTCCAGCTGTTCTCAGTTACACACACGGCCTGGGGCCCCAGCAGCTGC
CACATCACTGGCTCCACTTCTGAAGGGGAATTCAGTCCTCAGACCCACTGCACCAAGTTA
GCATAGCGGTACAAGTTCCCCGCCAGGGCAGATATTGCTTTTGCGCGGAGTAGGCCAAGC
CTGGAAGCCATCCCGCCCTTCCGACCCAAAGCAAAACAGCAGCGTCTGAAGGGCCCGCAG
GAGGACTTTGACCACTGAGCCAACCATCCCTCTTTGGAACAGATCTTTGGCTCTGCGGAA
TTTAGTGGTATTTGTGACAAAATAGGAGGAAGAGAGATAGGGATTAAGGCCAAGGTGGTG
GGTCAGCGAAACCGAGAAAGAGACCTTTTCCCAGTGGAAGGCCTGGGGCGTGGTCAGAAT
CCGGACCAGACCTCACACAGCTGTCCCCTCCCGGAGACCTCTTGCTACAGACTTTGCTGG
GCCTCTTGCTTAAAGCCAAGGCAGCTCTTTGGAGTTTCTGTAAAGCTACTAATGACCAAT
TCAGTGGTGGAACACACCACACAAATTATGGGAACAAGGGGTAGACTTACAGCAGGGCTA
TATTAGGGGTATGTTATGAAGAACCTCTCTCTGTGCAATCAACGTTTAAGTACATAATGT
GAGAGAGATGGATATCGATCCTTGTAACACAATCTGTTCCTCTCCCTCTAAATTATACAC
GTTGAGGAAGTTTTATCTAATTTTCCACGTTGGGGATCAGGGCTCCCAGGTTCAGAGACA
ACTCTGGCTTTGACATCAGCTGGAGCGGCCGCTCTTCAGTAGGCCTGCTGGTTCTGCAAC
ACAGGCGAGGCAAGGCAATTCTGAAAGCTTTTTAACACACATGTGGACCCAAACCAAAGA
ACAGATCCTTAGGTGAAAGGTGCTATATAATTGTCAAGTATTAAGCATATCAGATGTCAG
TCACAACAGGAACAGAGTGTCTACATTCCCAGGAAAGGAAGAAAATTTCCATGAGAGAAA
TACAAATAATAGGTGATGGGCAGATATTTTCCTTAAAAAAAAATTAATCTAAAAACTCTT
GTGGTACCCAGTCAGATGGTAGTTGAGCTTGTCTGTTACCACAGGAGAATTTCCATATAG
GACATAGACGTATACAGTATGGTATTCCTGGTTAAGCAGGCATTGCTCTGGCCTGGCGCA
GCTATTTTAAGCCATCTCAGATTCTGCCTGAAGGGTTTTTATTTTTATTTTTGGTGGAAG
ACATTTCCTTTACCAATCTGAGAAGATCTGCCCTAGGGAGAATCTGAGATATCTTGCCTG
CTTTCCTTCTCCTAGCTCCCTCTTCATCTTATTTCTTAGATATTTTTCCTCTTGGGGAGT
TGTTATGCCACAATTGCTGGTATTTATGTAAAAGGATTATTACTAAGTACATTTCTTTAG
GTTCATTCTGGTTAAGGGGATGTTGAGGGTGGGCCACCAAATTGTCTGGGCTGGGGATAA
AGCAGTTGGCAAGCAAAAACTATGGGATGATGAACTTTTCAATTATGATTTAATGATCAC
ATGAGTATAGAAAGCTGTTTTGAGTGCTGAAACAGACTTACCTATCAGATATATCCAAAA
GAGATTCTATGTTAAAAAGTCAGACTATGACTGGAGTGAACCATGTATTCCCTTGTCTTT
TACTTTGTTTCTGTGACATTTATGTTTCATGTAACTTGCATTATGTTGGTGGGTTGTCCT
AGTACTGTATTTGGCTTCTTCTTTAATAGATTGATATTTCATATACTATAATTGTAAATA
TTTTGATACAAATGTTTATAACTCTAGGCATATAAAAACAGATTCTGATTCCCTTCACTG
TGTGAATGTTTTCTGTTGAAAAAATGGAGGATAAATATGGATACTAATGACACTCATTCC
TAATTAAGTTTTCAATCAGTTTGATTTGGATAACTTGCATTTATCCGAGATATTGAGCTA
CTTTCTGATAATGCATCAAGCATTTCTACCATAACTCTTTCACGCAACTGAATGTTGTTA
AGTATAGTTTTATCTTGCTTTAATTAAACTTCTTAAGCAAAAAAAAAGAAACTTCATAAG
CTAATACATTAGAGAAAGGTTATGATCTTGAATCAGAATGGCTTATGGCATTAAGGAATG
AGATACTTGTAAATTTTCTTTGAAACAGCCAACTCCTCTGTTGTGTCTTCACAATTCAAA
AGATATGCCTCACTGTACTTGCAGAAGCCCATTCACTGCATAAACTGGGGTGTATCTGTA
TGGGCTCTATGAGAGAAGGAAAGCTTTGAAGACTTCTGGGTTCAGTAAGGACTGGAATCA
AGGGTGGAAAGCAGAGTAGGTGCTATGTACCCCAGCATCATGTCACCACCAATACGATGA
GAATGGTTTTTGTGTGAAGTAGGCAACCTTTCAGTCCCTAGTGATCTTGGATGAAATGTA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
65-1951, gnl|bosTau2|chr5 (56577131-56575262) |
|
65-1951, gnl|Hg17|chr12 (13259117-13261028) |
|
65-1951, gnl|Mm7|chr6 (135395705-135397549) |
| |
|
1967-2517, gnl|bosTau2|chr5 (56575265-56574718) |
|
1967-2517, gnl|canFam2|chr27 (36196707-36196153) |
|
1967-2517, gnl|dasNov1|scaffold_6111 (87398-86864) |
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1967-2517, gnl|echTel1|scaffold_324589 (196188-196728) |
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1967-2517, gnl|hg17|chr12 (13261014-13261574) |
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1967-2517, gnl|Hg17|chr12 (13261025-13261593) |
|
1967-2517, gnl|loxAfr1|scaffold_406 (130597-131143) |
|
1967-2517, gnl|mm7|chr6 (135397535-135398083) |
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1967-2517, gnl|Mm7|chr6 (135397546-135398100) |
|
1967-2517, gnl|monDom2|scaffold_31 (17989706-17989076) |
|
1967-2517, gnl|oryCun1|scaffold_194960 (19360-18839) |
|
1967-2517, gnl|panTro1|chrUn_random (39515862-39516420) |
|
1967-2517, gnl|rheMac2|chr11 (13586922-13587481) |
|
1967-2517, gnl|rn3|chr4 (172580514-172581050) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
65-1951, gnl|bosTau2|chr5 (56577131-56575262) |
|
65-1951, gnl|Hg17|chr12 (13259117-13261028) |
|
65-1951, gnl|Mm7|chr6 (135395705-135397549) |
| |
|
1967-2517, gnl|bosTau2|chr5 (56575265-56574718) |
|
1967-2517, gnl|canFam2|chr27 (36196707-36196153) |
|
1967-2517, gnl|dasNov1|scaffold_6111 (87398-86864) |
|
1967-2517, gnl|echTel1|scaffold_324589 (196188-196728) |
|
1967-2517, gnl|hg17|chr12 (13261014-13261574) |
|
1967-2517, gnl|Hg17|chr12 (13261025-13261593) |
|
1967-2517, gnl|loxAfr1|scaffold_406 (130597-131143) |
|
1967-2517, gnl|mm7|chr6 (135397535-135398083) |
|
1967-2517, gnl|Mm7|chr6 (135397546-135398100) |
|
1967-2517, gnl|monDom2|scaffold_31 (17989706-17989076) |
|
1967-2517, gnl|oryCun1|scaffold_194960 (19360-18839) |
|
1967-2517, gnl|panTro1|chrUn_random (39515862-39516420) |
|
1967-2517, gnl|rheMac2|chr11 (13586922-13587481) |
|
1967-2517, gnl|rn3|chr4 (172580514-172581050) |
|
rec (2.59605) |
|
lin (1.74723) |
|
jca (1.25356) |
|
ton (1.2285) |
|
fat (1.17942) |
|
csk (1.12597) |
|
mga (1.12144) |
|
aor (0.781097) |
|
col (0.780031) |
|
vin (0.665115) |
|
tra (0.61546) |
|
ski (0.586941) |
|
ret (0.514933) |
|
pro (0.512033) |
|
mgp (0.461361) |
|
isp (0.451128) |
|
amn (0.417711) |
|
hea (0.408998) |
|
ste (0.405625) |
|
ldo (0.38801) |
|
sug (0.381874) |
|
cmu (0.372787) |
|
duo (0.345602) |
|
cty (0.31224) |
|
bfe (0.299715) |
|
eje (0.296501) |
|
che (0.272628) |
|
pla (0.267344) |
|
kid (0.259471) |
|
bla (0.248694) |
|
nms (0.213858) |
|
nlu (0.191681) |
|
nep (0.183925) |
|
fty (0.17584) |
|
ill (0.175593) |
|
sin (0.174948) |
|
nje (0.16592) |
|
nco (0.161734) |
|
tbr (0.154178) |
|
spl (0.143184) |
|
hlv (0.139256) |
|
nmm (0.132802) |
|
ova (0.129132) |
|
thg (0.126791) |
|
ese (0.126502) |
|
eru (0.120048) |
|
clu (0.119646) |
|
pgl (0.118483) |
|
ebs (0.118301) |
|
jej (0.0989218) |
|
rec (2.59605) |
|
lin (1.74723) |
|
jca (1.25356) |
|
ton (1.2285) |
|
fat (1.17942) |
|
csk (1.12597) |
|
mga (1.12144) |
|
aor (0.781097) |
|
col (0.780031) |
|
vin (0.665115) |
|
tra (0.61546) |
|
ski (0.586941) |
|
ret (0.514933) |
|
pro (0.512033) |
|
mgp (0.461361) |
|
isp (0.451128) |
|
amn (0.417711) |
|
hea (0.408998) |
|
ste (0.405625) |
|
ldo (0.38801) |
|
sug (0.381874) |
|
cmu (0.372787) |
|
duo (0.345602) |
|
cty (0.31224) |
|
bfe (0.299715) |
|
eje (0.296501) |
|
che (0.272628) |
|
pla (0.267344) |
|
kid (0.259471) |
|
bla (0.248694) |
|
nms (0.213858) |
|
nlu (0.191681) |
|
nep (0.183925) |
|
fty (0.17584) |
|
ill (0.175593) |
|
sin (0.174948) |
|
nje (0.16592) |
|
nco (0.161734) |
|
tbr (0.154178) |
|
spl (0.143184) |
|
hlv (0.139256) |
|
nmm (0.132802) |
|
ova (0.129132) |
|
thg (0.126791) |
|
ese (0.126502) |
|
eru (0.120048) |
|
clu (0.119646) |
|
pgl (0.118483) |
|
ebs (0.118301) |
|
jej (0.0989218) |
