Non-Coding RNA Search

Ss1.1-rtra11_j3.5

Sequence:


               
               GGTGAGCACGCTGAGTTCTACTGTATCCCACGACTCCCAGAGTGCTCACCGATCACTGAA
CGTACAGCTTGGAAGGATGAAAATAGAGACAAATAGATTACTGGAAGAATTGGTTCAGAA
AGAGAAAGAATTACAAGCACTCCTTCATCAAGCTATTGAAGAAAAAGACCAAGAAATTAA
ACACCTGAAGCTTAAGTCCCAACCAATAGATATTCCTGGATTGCCTGTGTGTCACCCAAA
TTCTCCTGGCACAAATACTGAAGATTCTGAGCTTACTGACTGGCTGAGAGAAAATGGAGC
CGATGAAGACACTATAAGTCGGTTTTTGGCTGAGGATTATTCACTAGTGGATGTTCTCTA
CTATGTTACACGTGATGATTTAAAATGCCTGAGACTAAGAGGAGGGATGCTGTGTGCCCT
GTGGAAAGCCATCACTGACTTTCGAGACAAACAGACTTGACTGTCACTCGATTTGTTTGC
AACTTTCCCTGGAGATTCCACAAACGAATATGGACCTGGTCTTTTTGGGGAGGGAGAATC
GAAGGGAGAGGAGAAAGAAGCTGCACTTTAAATCCAGTATTTGTTTACTTGTGTCAAAAA
CAAAACAAAACAAAACACACTGAAATTTCCTGCTTCTATTTCTATGATTCATAAGGACTC
TTTGTAAGGACTCAGAAGAATCCTAAACGCTGGGATGTTTGGGATCATGTTAGTCTAAAC
ATTTTTATGGGAATATTTTTAATTCAGCAGCTATCGCACTTCAGCCACAGGTTTATCTCA
CACGAAACGAAGAGGACATTTCATGTGACTGTGCATCACTGGAACAAAACCAAAATGTGA
CCATAACTTTTCAGGCTTATGTGTGTTTGTAATATGCCCTGATAATCTGAGTAGAAATGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGAGCACGCTGAGTTCTACTGTATCCCACGACTCCCAGAGTGCTCACCGATCACTGAA
CGTACAGCTTGGAAGGATGAAAATAGAGACAAATAGATTACTGGAAGAATTGGTTCAGAA
AGAGAAAGAATTACAAGCACTCCTTCATCAAGCTATTGAAGAAAAAGACCAAGAAATTAA
ACACCTGAAGCTTAAGTCCCAACCAATAGATATTCCTGGATTGCCTGTGTGTCACCCAAA
TTCTCCTGGCACAAATACTGAAGATTCTGAGCTTACTGACTGGCTGAGAGAAAATGGAGC
CGATGAAGACACTATAAGTCGGTTTTTGGCTGAGGATTATTCACTAGTGGATGTTCTCTA
CTATGTTACACGTGATGATTTAAAATGCCTGAGACTAAGAGGAGGGATGCTGTGTGCCCT
GTGGAAAGCCATCACTGACTTTCGAGACAAACAGACTTGACTGTCACTCGATTTGTTTGC
AACTTTCCCTGGAGATTCCACAAACGAATATGGACCTGGTCTTTTTGGGGAGGGAGAATC
GAAGGGAGAGGAGAAAGAAGCTGCACTTTAAATCCAGTATTTGTTTACTTGTGTCAAAAA
CAAAACAAAACAAAACACACTGAAATTTCCTGCTTCTATTTCTATGATTCATAAGGACTC
TTTGTAAGGACTCAGAAGAATCCTAAACGCTGGGATGTTTGGGATCATGTTAGTCTAAAC
ATTTTTATGGGAATATTTTTAATTCAGCAGCTATCGCACTTCAGCCACAGGTTTATCTCA
CACGAAACGAAGAGGACATTTCATGTGACTGTGCATCACTGGAACAAAACCAAAATGTGA
CCATAACTTTTCAGGCTTATGTGTGTTTGTAATATGCCCTGATAATCTGAGTAGAAATGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26329421|dbj|BAC28449.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26329421|dbj|BAC28449.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               627-754, + strand, RNAz p=0.999484

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               627-754, + strand, RNAz p=0.999484

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of D84476, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of D84476, +

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               95-209, gnl|bosTau2|chr9 (43740611-43740725)
               

               
               95-209, gnl|canFam2|chr1 (32154881-32155007)
               

               
               95-209, gnl|dasNov1|scaffold_40 (190746-190872)
               

               
               95-209, gnl|fr1|chrUn (177180875-177181001)
               

               
               95-209, gnl|galGal2|chr3 (53972608-53972484)
               

               
               95-209, gnl|hg17|chr6 (136925336-136925462)
               

               
               95-209, gnl|Hg17|chr6 (136925448-136925334)
               

               
               95-209, gnl|loxAfr1|scaffold_5531 (59315-59189)
               

               
               95-209, gnl|mm7|chr10 (19861670-19861545)
               

               
               95-209, gnl|Mm7|chr10 (19861556-19861670)
               

               
               95-209, gnl|monDom2|scaffold_0 (73578309-73578182)
               

               
               95-209, gnl|oryCun1|scaffold_81316 (5459-5331)
               

               
               95-209, gnl|panTro1|chr5 (139727390-139727516)
               

               
               95-209, gnl|rheMac2|chr4 (127272796-127272670)
               

               
               95-209, gnl|rn3|chr1 (15408506-15408381)
               

               
               95-209, gnl|xenTro1|scaffold_188 (1074201-1074076)
               


               
               398-900, gnl|bosTau2|chr9 (43744044-43744555)
               

               
               398-900, gnl|Hg17|chr6 (136920651-136920139)
               

               
               398-900, gnl|Mm7|chr10 (19866185-19866706)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               95-209, gnl|bosTau2|chr9 (43740611-43740725)
               

               
               95-209, gnl|canFam2|chr1 (32154881-32155007)
               

               
               95-209, gnl|dasNov1|scaffold_40 (190746-190872)
               

               
               95-209, gnl|fr1|chrUn (177180875-177181001)
               

               
               95-209, gnl|galGal2|chr3 (53972608-53972484)
               

               
               95-209, gnl|hg17|chr6 (136925336-136925462)
               

               
               95-209, gnl|Hg17|chr6 (136925448-136925334)
               

               
               95-209, gnl|loxAfr1|scaffold_5531 (59315-59189)
               

               
               95-209, gnl|mm7|chr10 (19861670-19861545)
               

               
               95-209, gnl|Mm7|chr10 (19861556-19861670)
               

               
               95-209, gnl|monDom2|scaffold_0 (73578309-73578182)
               

               
               95-209, gnl|oryCun1|scaffold_81316 (5459-5331)
               

               
               95-209, gnl|panTro1|chr5 (139727390-139727516)
               

               
               95-209, gnl|rheMac2|chr4 (127272796-127272670)
               

               
               95-209, gnl|rn3|chr1 (15408506-15408381)
               

               
               95-209, gnl|xenTro1|scaffold_188 (1074201-1074076)
               


               
               398-900, gnl|bosTau2|chr9 (43744044-43744555)
               

               
               398-900, gnl|Hg17|chr6 (136920651-136920139)
               

               
               398-900, gnl|Mm7|chr10 (19866185-19866706)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               hea (0.204499)
               

               
               sag (0.182715)
               

               
               csk (0.140746)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               tra (0.123092)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               csk (0.140746)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               tra (0.123092)

	95-209, gnl\|bosTau2\|chr9 (43740611-43740725)
	95-209, gnl\|canFam2\|chr1 (32154881-32155007)
	95-209, gnl\|dasNov1\|scaffold_40 (190746-190872)
	95-209, gnl\|fr1\|chrUn (177180875-177181001)
	95-209, gnl\|galGal2\|chr3 (53972608-53972484)
	95-209, gnl\|hg17\|chr6 (136925336-136925462)
	95-209, gnl\|Hg17\|chr6 (136925448-136925334)
	95-209, gnl\|loxAfr1\|scaffold_5531 (59315-59189)
	95-209, gnl\|mm7\|chr10 (19861670-19861545)
	95-209, gnl\|Mm7\|chr10 (19861556-19861670)
	95-209, gnl\|monDom2\|scaffold_0 (73578309-73578182)
	95-209, gnl\|oryCun1\|scaffold_81316 (5459-5331)
	95-209, gnl\|panTro1\|chr5 (139727390-139727516)
	95-209, gnl\|rheMac2\|chr4 (127272796-127272670)
	95-209, gnl\|rn3\|chr1 (15408506-15408381)
	95-209, gnl\|xenTro1\|scaffold_188 (1074201-1074076)

	398-900, gnl\|bosTau2\|chr9 (43744044-43744555)
	398-900, gnl\|Hg17\|chr6 (136920651-136920139)
	398-900, gnl\|Mm7\|chr10 (19866185-19866706)

	hea (0.204499)
	sag (0.182715)
	csk (0.140746)
	kid (0.129735)
	ret (0.128733)
	bla (0.124347)
	tra (0.123092)