Non-Coding RNA Search

Ss1.1-rtra11_j4.5

Sequence:


               
               TTTTCTAAATATCATTTGAGAATATTCTTTCAGAAATGTTTTAGTTTTTACTTTTTGATA
CTTTATGTTTTATGTAGTAAAACTGTACATTTTTAACCCTACCTGAAGACTTGAGAGTAT
AACCCTTTTAAAAAACAGTAATTTCTTTATGTATTTCATCATATTGAATTTCTGTCAACT
GTTTCAAAAGGTTTTACAAAAACCCAAGAGTAGGTTTGCACATATCTATGTTGTTATTCC
TTCTAAGCTTAAGAAGTCTCCAATAAAATCTGTACTTCTTTATATTTTGTACCTTTTTAA
TTCTAATATTTGCAACATGAATTAGCCAAAAGATAAAACTTCCTTTTCTCTTCCTTCTGT
CCCTATTTTCTACTATAGTTTTCAAAATTTGTTAACATACCCACAAAAGATAGCAGTTGT
CTAGGAAAGCCTTGGATTCATTGGTCCAAGTTTTGTTTGTTTTCTCTTCAAGTGCCTGAC
ATGATAATTTATCAGAGTGAAAACAGCAGATTCAGATTAAGTTTAAAAGCTCCATTGTCA
TCATTCTCAGTGACTGTCAACCATTGGATACATTCTAATCCTGTGATATTTGTTGACTTA
TATGACCTCCTTGACAGAAAAGACATACCGAACTAAGAAGGGAGTTAACATCCAATGGAC
CATACTTGTCCTTTGCAAAGGAATGAATGATTCGTTTTAAACTTTTCTAAGCTTAGCTAT
GGTCTTGGGAACATTCATGGTAATTCCACAGTGATTCTGCAGACTGAATGCCCGTTAAAG
AGAAAGTGGCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTCTAAATATCATTTGAGAATATTCTTTCAGAAATGTTTTAGTTTTTACTTTTTGATA
CTTTATGTTTTATGTAGTAAAACTGTACATTTTTAACCCTACCTGAAGACTTGAGAGTAT
AACCCTTTTAAAAAACAGTAATTTCTTTATGTATTTCATCATATTGAATTTCTGTCAACT
GTTTCAAAAGGTTTTACAAAAACCCAAGAGTAGGTTTGCACATATCTATGTTGTTATTCC
TTCTAAGCTTAAGAAGTCTCCAATAAAATCTGTACTTCTTTATATTTTGTACCTTTTTAA
TTCTAATATTTGCAACATGAATTAGCCAAAAGATAAAACTTCCTTTTCTCTTCCTTCTGT
CCCTATTTTCTACTATAGTTTTCAAAATTTGTTAACATACCCACAAAAGATAGCAGTTGT
CTAGGAAAGCCTTGGATTCATTGGTCCAAGTTTTGTTTGTTTTCTCTTCAAGTGCCTGAC
ATGATAATTTATCAGAGTGAAAACAGCAGATTCAGATTAAGTTTAAAAGCTCCATTGTCA
TCATTCTCAGTGACTGTCAACCATTGGATACATTCTAATCCTGTGATATTTGTTGACTTA
TATGACCTCCTTGACAGAAAAGACATACCGAACTAAGAAGGGAGTTAACATCCAATGGAC
CATACTTGTCCTTTGCAAAGGAATGAATGATTCGTTTTAAACTTTTCTAAGCTTAGCTAT
GGTCTTGGGAACATTCATGGTAATTCCACAGTGATTCTGCAGACTGAATGCCCGTTAAAG
AGAAAGTGGCCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               120-223, - strand, RNAz p=0.714167

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-223, - strand, RNAz p=0.714167

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-788, gnl|bosTau2|chr5 (17284306-17283542)
               

               
               1-788, gnl|Hg17|chr12 (94206080-94207398)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-788, gnl|bosTau2|chr5 (17284306-17283542)
               

               
               1-788, gnl|Hg17|chr12 (94206080-94207398)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tra (0.123092)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.123092)

	1-788, gnl\|bosTau2\|chr5 (17284306-17283542)
	1-788, gnl\|Hg17\|chr12 (94206080-94207398)