Ss1.1-rtra11_o13.5
|
AAAAACACACATCCTGAAAGTCTTTTAAGTTTTTTTTTGTTGTTGTTGTTGTAATTGTAG
TTCTTCAAAGTTAAAGATATAAGCAAAAAAGTCTGGAGGAAAGGATAATTTCCACTGTGT
GGAATGTGAATAGTTAAACAAAAAGTTATGGTTATTTAATGTAATTATTAACTCAGATCC
TTTGGTCACTGTGATTTTAAGCATTTTTTTTTTCTCCTTTATATGACTTCCTCTGAGTTG
AGCAAAGAAGAGGCTGGCATATTGTATGTTGTTGGAGGCTTTTATCAGGTCAGAGGGAAA
CAATAAAATCTTGATACATCTGAATAGAGTCAAGATCTGAGCTTTAATTTTTTTAATTGA
ATGTTCCTTAAAGATTAACATTTCTGAGGCAATTTAACGAAGATTTTAAGTGTTATTTTG
GAAGAATTAAGATGTGTGTGTACAAACAAATAGCAGATAATAATGAGTAGTTCACCAGTC
CTTTTAAGGAGAAAATCTAAAATAAAAATTGTTATGTACAGAACATTTATAAATGACCAG
CTAATACTTAAGAGTGAAAGTAGTTCTACTGATTTGTCATTCTCAAAATATTTAATATCG
ATTGCATTATGTATTATGTTTACTTTAATCATGTAAGGACAACAGAGAATTCTAAAGACT
ATGATTGGGGTCCTTTGCTGTGTGAGAGAATGAGAGGGGATTTGGTAGTCTTATAAAAGC
TAATTTGGTTTAAGCAAAGTTTTATAAATCTGTAACTAGAATTTAATTTCACCCCAATAG
TGTTCTATATAACCTTTCCCAAAGAGCAATCAATAAATTGAACCTCTT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AAAAACACACATCCTGAAAGTCTTTTAAGTTTTTTTTTGTTGTTGTTGTTGTAATTGTAG
TTCTTCAAAGTTAAAGATATAAGCAAAAAAGTCTGGAGGAAAGGATAATTTCCACTGTGT
GGAATGTGAATAGTTAAACAAAAAGTTATGGTTATTTAATGTAATTATTAACTCAGATCC
TTTGGTCACTGTGATTTTAAGCATTTTTTTTTTCTCCTTTATATGACTTCCTCTGAGTTG
AGCAAAGAAGAGGCTGGCATATTGTATGTTGTTGGAGGCTTTTATCAGGTCAGAGGGAAA
CAATAAAATCTTGATACATCTGAATAGAGTCAAGATCTGAGCTTTAATTTTTTTAATTGA
ATGTTCCTTAAAGATTAACATTTCTGAGGCAATTTAACGAAGATTTTAAGTGTTATTTTG
GAAGAATTAAGATGTGTGTGTACAAACAAATAGCAGATAATAATGAGTAGTTCACCAGTC
CTTTTAAGGAGAAAATCTAAAATAAAAATTGTTATGTACAGAACATTTATAAATGACCAG
CTAATACTTAAGAGTGAAAGTAGTTCTACTGATTTGTCATTCTCAAAATATTTAATATCG
ATTGCATTATGTATTATGTTTACTTTAATCATGTAAGGACAACAGAGAATTCTAAAGACT
ATGATTGGGGTCCTTTGCTGTGTGAGAGAATGAGAGGGGATTTGGTAGTCTTATAAAAGC
TAATTTGGTTTAAGCAAAGTTTTATAAATCTGTAACTAGAATTTAATTTCACCCCAATAG
TGTTCTATATAACCTTTCCCAAAGAGCAATCAATAAATTGAACCTCTT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
233-303, + strand, RNAmicro p=0.916723 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
233-303, + strand, RNAmicro p=0.916723 |
|
42-828, gnl|bosTau2|chr10 (20335834-20336624) |
|
42-828, gnl|canFam2|chr30 (5209620-5208613) |
|
42-828, gnl|galGal2|chr5 (27450489-27449470) |
|
42-828, gnl|hg17|chr15 (30813028-30814039) |
|
42-828, gnl|Hg17|chr15 (30813367-30814153) |
|
42-828, gnl|mm7|chr2 (113597501-113596530) |
|
42-828, gnl|Mm7|chr2 (113597163-113596411) |
|
42-828, gnl|monDom2|scaffold_12 (10099844-10100880) |
|
42-828, gnl|oryCun1|scaffold_215186 (48649-47638) |
|
42-828, gnl|panTro1|chr16 (30421821-30422836) |
|
42-828, gnl|rheMac2|chr7 (10957832-10958851) |
|
42-828, gnl|rn3|chr3 (99494692-99493758) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
42-828, gnl|bosTau2|chr10 (20335834-20336624) |
|
42-828, gnl|canFam2|chr30 (5209620-5208613) |
|
42-828, gnl|galGal2|chr5 (27450489-27449470) |
|
42-828, gnl|hg17|chr15 (30813028-30814039) |
|
42-828, gnl|Hg17|chr15 (30813367-30814153) |
|
42-828, gnl|mm7|chr2 (113597501-113596530) |
|
42-828, gnl|Mm7|chr2 (113597163-113596411) |
|
42-828, gnl|monDom2|scaffold_12 (10099844-10100880) |
|
42-828, gnl|oryCun1|scaffold_215186 (48649-47638) |
|
42-828, gnl|panTro1|chr16 (30421821-30422836) |
|
42-828, gnl|rheMac2|chr7 (10957832-10958851) |
|
42-828, gnl|rn3|chr3 (99494692-99493758) |
|
tra (0.492368) |
|
amn (0.417711) |
|
nca (0.273748) |
|
kid (0.259471) |
|
sin (0.174948) |
|
rec (0.17307) |
|
liv (0.146284) |
|
lin (0.145603) |
|
tra (0.492368) |
|
amn (0.417711) |
|
nca (0.273748) |
|
kid (0.259471) |
|
sin (0.174948) |
|
rec (0.17307) |
|
liv (0.146284) |
|
lin (0.145603) |
