Ss1.1-rtra11_p20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGACCTTGGAGCCAGGAGTCCCCGCCAGGGGCTGCACAACGGCGGCGATTGCGGGGCGA GGAGGAACGCCATGCAGGATCCAAATGAAGATACAGAATGGAATGAAATTTTAAGAGATT TTGGCATTCTTCCTCCAAAAGAAGAGCCCAAAGATGAAGTTGAAGAAATGGTTTTACATT TACAGAAGGAAGCAATGGTTAAACCATATGAAAAGATGACTCTTGAACAGTTGAAGGAAG TTGAAGATGAATTTGATGATGAAGATATGAGAGCTATTGAAATATATAGAGAGAAGCGAT TACAGGAATGGAAAGCTCTTAAGAAAAAACAAAAATTTGGGGAATTAAGAGAAATTTCTG GAACTCAGTATGTGGATGAAGTCACAAATGCAGAAAAAGATGTGTGGGTTATAATCCATC TGTACAGGTCAAGAGCTTGAATGGAAGCTAGCAGAAGTTGGAGCAGTACAGACTGATTTG GAAGAAAATCCCAAAAAAGGCATTATAGATGTGATGGTATCTTCAATTAGAAACACTTCT GTGACAATTGTTTACCAACAATTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGACCTTGGAGCCAGGAGTCCCCGCCAGGGGCTGCACAACGGCGGCGATTGCGGGGCGA GGAGGAACGCCATGCAGGATCCAAATGAAGATACAGAATGGAATGAAATTTTAAGAGATT TTGGCATTCTTCCTCCAAAAGAAGAGCCCAAAGATGAAGTTGAAGAAATGGTTTTACATT TACAGAAGGAAGCAATGGTTAAACCATATGAAAAGATGACTCTTGAACAGTTGAAGGAAG TTGAAGATGAATTTGATGATGAAGATATGAGAGCTATTGAAATATATAGAGAGAAGCGAT TACAGGAATGGAAAGCTCTTAAGAAAAAACAAAAATTTGGGGAATTAAGAGAAATTTCTG GAACTCAGTATGTGGATGAAGTCACAAATGCAGAAAAAGATGTGTGGGTTATAATCCATC TGTACAGGTCAAGAGCTTGAATGGAAGCTAGCAGAAGTTGGAGCAGTACAGACTGATTTG GAAGAAAATCCCAAAAAAGGCATTATAGATGTGATGGTATCTTCAATTAGAAACACTTCT GTGACAATTGTTTACCAACAATTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 287-405, + strand, RNAz p=0.958634 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 287-405, + strand, RNAz p=0.958634 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 76-201, gnl|bosTau2|chr6 (38976099-38976224) | |
| 76-201, gnl|canFam2|chr13 (50788465-50788375) | |
| 76-201, gnl|canFam2|chr13 (50788340-50788468) | |
| 76-201, gnl|dasNov1|scaffold_24561 (3265-3159) | |
| 76-201, gnl|dasNov1|scaffold_24561 (3124-3252) | |
| 76-201, gnl|fr1|chrUn (275014475-275014382) | |
| 76-201, gnl|fr1|chrUn (275014357-275014472) | |
| 76-201, gnl|galGal2|chr4 (65533610-65533484) | |
| 76-201, gnl|hg17|chr4 (56289210-56289338) | |
| 76-201, gnl|Hg17|chr4 (56289334-56289209) | |
| 76-201, gnl|hg17|chrX (22976102-22976208) | |
| 76-201, gnl|mm7|chr5 (76257441-76257349) | |
| 76-201, gnl|mm7|chr5 (76257314-76257442) | |
| 76-201, gnl|Mm7|chr5 (76257438-76257313) | |
| 76-201, gnl|monDom2|scaffold_26 (19362300-19362428) | |
| 76-201, gnl|monDom2|scaffold_9 (26262584-26262478) | |
| 76-201, gnl|panTro1|chr3 (90351196-90351068) | |
| 76-201, gnl|panTro1|chrX (23791010-23791116) | |
| 76-201, gnl|rheMac2|chr5 (73811654-73811750) | |
| 76-201, gnl|rheMac2|chr5 (73811785-73811657) | |
| 76-201, gnl|rn3|chr14 (34152098-34152191) | |
| 76-201, gnl|rn3|chr14 (34152226-34152098) | |
| 76-201, gnl|tetNig1|chr2 (17980889-17980796) | |
| 76-201, gnl|tetNig1|chr2 (17980796-17980886) | |
| 287-433, gnl|bosTau2|chr6 (38984293-38984439) | |
| 287-433, gnl|canFam2|chr13 (50773789-50773960) | |
| 287-433, gnl|dasNov1|scaffold_246894 (1774-1599) | |
| 287-433, gnl|echTel1|scaffold_134029 (744-916) | |
| 287-433, gnl|fr1|chrUn (275013525-275013673) | |
| 287-433, gnl|galGal2|chr4 (65535350-65535178) | |
| 287-433, gnl|hg17|chr4 (56276811-56276986) | |
| 287-433, gnl|Hg17|chr4 (56276959-56276813) | |
| 287-433, gnl|mm7|chr5 (76251448-76251614) | |
| 287-433, gnl|Mm7|chr5 (76251596-76251450) | |
| 287-433, gnl|monDom2|scaffold_26 (19356565-19356736) | |
| 287-433, gnl|oryCun1|scaffold_198019 (833-658) | |
| 287-433, gnl|panTro1|chr3 (90363617-90363442) | |
| 287-433, gnl|rheMac2|chr5 (73824543-73824368) | |
| 287-433, gnl|rn3|chr14 (34159294-34159146) | |
| 287-433, gnl|tetNig1|chr2 (17980209-17980385) | |
| 287-433, gnl|xenTro1|scaffold_85 (1015045-1015214) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 76-201, gnl|bosTau2|chr6 (38976099-38976224) | |
| 76-201, gnl|canFam2|chr13 (50788465-50788375) | |
| 76-201, gnl|canFam2|chr13 (50788340-50788468) | |
| 76-201, gnl|dasNov1|scaffold_24561 (3265-3159) | |
| 76-201, gnl|dasNov1|scaffold_24561 (3124-3252) | |
| 76-201, gnl|fr1|chrUn (275014475-275014382) | |
| 76-201, gnl|fr1|chrUn (275014357-275014472) | |
| 76-201, gnl|galGal2|chr4 (65533610-65533484) | |
| 76-201, gnl|hg17|chr4 (56289210-56289338) | |
| 76-201, gnl|Hg17|chr4 (56289334-56289209) | |
| 76-201, gnl|hg17|chrX (22976102-22976208) | |
| 76-201, gnl|mm7|chr5 (76257441-76257349) | |
| 76-201, gnl|mm7|chr5 (76257314-76257442) | |
| 76-201, gnl|Mm7|chr5 (76257438-76257313) | |
| 76-201, gnl|monDom2|scaffold_26 (19362300-19362428) | |
| 76-201, gnl|monDom2|scaffold_9 (26262584-26262478) | |
| 76-201, gnl|panTro1|chr3 (90351196-90351068) | |
| 76-201, gnl|panTro1|chrX (23791010-23791116) | |
| 76-201, gnl|rheMac2|chr5 (73811654-73811750) | |
| 76-201, gnl|rheMac2|chr5 (73811785-73811657) | |
| 76-201, gnl|rn3|chr14 (34152098-34152191) | |
| 76-201, gnl|rn3|chr14 (34152226-34152098) | |
| 76-201, gnl|tetNig1|chr2 (17980889-17980796) | |
| 76-201, gnl|tetNig1|chr2 (17980796-17980886) | |
| 287-433, gnl|bosTau2|chr6 (38984293-38984439) | |
| 287-433, gnl|canFam2|chr13 (50773789-50773960) | |
| 287-433, gnl|dasNov1|scaffold_246894 (1774-1599) | |
| 287-433, gnl|echTel1|scaffold_134029 (744-916) | |
| 287-433, gnl|fr1|chrUn (275013525-275013673) | |
| 287-433, gnl|galGal2|chr4 (65535350-65535178) | |
| 287-433, gnl|hg17|chr4 (56276811-56276986) | |
| 287-433, gnl|Hg17|chr4 (56276959-56276813) | |
| 287-433, gnl|mm7|chr5 (76251448-76251614) | |
| 287-433, gnl|Mm7|chr5 (76251596-76251450) | |
| 287-433, gnl|monDom2|scaffold_26 (19356565-19356736) | |
| 287-433, gnl|oryCun1|scaffold_198019 (833-658) | |
| 287-433, gnl|panTro1|chr3 (90363617-90363442) | |
| 287-433, gnl|rheMac2|chr5 (73824543-73824368) | |
| 287-433, gnl|rn3|chr14 (34159294-34159146) | |
| 287-433, gnl|tetNig1|chr2 (17980209-17980385) | |
| 287-433, gnl|xenTro1|scaffold_85 (1015045-1015214) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (1.75644) | |
| tes (0.831255) | |
| tra (0.492368) |