Non-Coding RNA Search

Ss1.1-rtra12_c24.5

Sequence:


               
               TGGGTGGGGATCCGGCATTGCCAGGAGCTGTGGTGTAGGTCACAGAAGCAGCTCGGATCC
TGTGTTGCTGTGGTATAGGCCGGCACCTACAGCTCCAATTGGACCCCCTAGCCTGGGAAC
CTGCATATGCCACAGGTGAGGCCCTAAAAAAAAAAAACAGATAAATAAAACCCATTTATG
TGAATTACCATCTTGTTTCACTCAGATCAGGGAACAGTAGTTTACCCTAGCAGGGAAGAA
GACATCGTAGCAACCCAGGATTGTTCTCTTGGAATGCAGTAGTAATTGAGAAGCAGAAGA
TGGGGTCTTTTCTTGTAATCCCAATAGGCATACACTTTCGGGGTCCTAGTGCTAAAATTT
TTTAAGCCTAGTATTTAAACCTAAGGTTTTCGTCACCAACTTTTCTTTAACAGTGTTCTT
TTTATCAAGTAGTTGATTTTCCTGGGTTTGGTATATATTAAGTGTTCTGTGAGATGACAT
ACATGCTTTTTTTGGAATCCGAGTCTTACGAGTTGAAGCCGAGTTCCTTTCCGTTCACCG
TATTTACTGAAATACTTGGCACAGAAATCACCGAAACTTAGAGCAGTAGCTTTATGTAAC
TGTTTCATGAATTTGTATTGTTAATATAATTGTCAACCCACTTAAGATTTGTGCAATATT
GTATATATGTAGAGGTTGAGTTGTCATTAAAACAAACAAAAAAGCCAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGTGGGGATCCGGCATTGCCAGGAGCTGTGGTGTAGGTCACAGAAGCAGCTCGGATCC
TGTGTTGCTGTGGTATAGGCCGGCACCTACAGCTCCAATTGGACCCCCTAGCCTGGGAAC
CTGCATATGCCACAGGTGAGGCCCTAAAAAAAAAAAACAGATAAATAAAACCCATTTATG
TGAATTACCATCTTGTTTCACTCAGATCAGGGAACAGTAGTTTACCCTAGCAGGGAAGAA
GACATCGTAGCAACCCAGGATTGTTCTCTTGGAATGCAGTAGTAATTGAGAAGCAGAAGA
TGGGGTCTTTTCTTGTAATCCCAATAGGCATACACTTTCGGGGTCCTAGTGCTAAAATTT
TTTAAGCCTAGTATTTAAACCTAAGGTTTTCGTCACCAACTTTTCTTTAACAGTGTTCTT
TTTATCAAGTAGTTGATTTTCCTGGGTTTGGTATATATTAAGTGTTCTGTGAGATGACAT
ACATGCTTTTTTTGGAATCCGAGTCTTACGAGTTGAAGCCGAGTTCCTTTCCGTTCACCG
TATTTACTGAAATACTTGGCACAGAAATCACCGAAACTTAGAGCAGTAGCTTTATGTAAC
TGTTTCATGAATTTGTATTGTTAATATAATTGTCAACCCACTTAAGATTTGTGCAATATT
GTATATATGTAGAGGTTGAGTTGTCATTAAAACAAACAAAAAAGCCAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               166-701, gnl|bosTau2|chr24 (26417672-26417128)
               

               
               166-701, gnl|Hg17|chr9 (86109564-86109042)
               

               
               166-701, gnl|Mm7|chr13 (58864397-58863852)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               166-701, gnl|bosTau2|chr24 (26417672-26417128)
               

               
               166-701, gnl|Hg17|chr9 (86109564-86109042)
               

               
               166-701, gnl|Mm7|chr13 (58864397-58863852)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               pro (0.512033)
               

               
               amn (0.417711)
               

               
               mgm (0.360685)
               

               
               isp (0.300752)
               

               
               bla (0.248694)
               

               
               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               amn (0.417711)
               

               
               mgm (0.360685)
               

               
               isp (0.300752)
               

               
               bla (0.248694)
               

               
               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)

	166-701, gnl\|bosTau2\|chr24 (26417672-26417128)
	166-701, gnl\|Hg17\|chr9 (86109564-86109042)
	166-701, gnl\|Mm7\|chr13 (58864397-58863852)

	pro (0.512033)
	amn (0.417711)
	mgm (0.360685)
	isp (0.300752)
	bla (0.248694)
	fhi (0.169578)
	tbr (0.154178)
	ssp (0.13552)
	lyg (0.133103)
	tra (0.123092)
	ebs (0.118301)