Non-Coding RNA Search

Ss1.1-rtra14_e8.5

Sequence:


               
               CCATCATCCACCCATTTCAGCCTTTTATGCTGAGTGTTATAACAAGAAGATACAATTCAA
TGCTCACATCTGGACCAAATCAAAATTCCTTGGGATGTCCATCGGGGTGCACAACATAGG
GCAGGGCTGTGTCTCGTGTCTGGACTATGACGAGCATTACATTCTCACGTTCCCCAATGG
TTACGGCAGGTCCATCCTCACAGTGCCCTGGGTGGAACTAGGCGGAGAATGCAGTATTAA
TTGTTCCAAAACCGGCTACAACGCAAATATCGTCTTCCACACTAAGCCTTTCTATGGGGG
CAAGAAGCACAGAATTACTGCTGAGATTTTTTCTCCAAATGACAAGAAGTCTTTCTGCTC
AATTGAAGGGGAATGGAATGGTGTAATGTATGCAAAGTATTCAACGGGGGAAAATGCAGT
TTTTATAGATACCAAGAAGTTGCCTATAATCAAGAAGAAAGTGAGGAAATTGGAGGACCA
GAATGAGTATGAATCCCGCTGCCTTTGGAAGGATGTCACTTTCAACTTAAAAATCAGAGA
CATTGATGCAGCAACTGAAGCCAAGCATAGACTTGAAGAAAGACAAAGAGCGGAAGCCCG
AGAAAGGAAGGAAAAGGAAATTCAATGGGAGACAAGGTTATTTCACGAGGATGGAGAATG
CTGGGTGTATGATGAACCGTTACTGAAACGTCTGGGTGCTGCCAAGCATTAGGTTGGGAA
ACAGGGTTTGCTCCTGATAACCAGGGCAGGAGGCGTAAGCAAGCAACAATCTTCCTTTGG
GAGAAGCTGTTAACTCCCTTCTTATTGCAGTGGTTCCTATCTCAGGGATACTGGACTTTC
TGATGCAGATGAACAATTAAAGCGAGAAGAGCTTCCATTTTTCCTGTTCTGTGGCAGTCA
CAATTTGACTTCAGTCCTGAGAAAAACTTCAGGTTTTGAAAACAAGATGTCTGCTCCTTT
TCCAAATCCCACGCTTTGAAAAGCATTTATAAATCCCAGTTTCAAACTCTGCACTCTAGA
ATTGCTGTTGTGATAATACAACATGTTTCTTAGTTCAGGTATCTTGGGTTCTATATATAT
ATATATATATATATACACACACACACACACACACACACATATATATACATATATATAATC
TAGCTGATGCCAGATTTTTCATAAATACTCCATCTACTGTAAATATTGGTTCCTCTGAGT
TGTTTTAGAAAATGTAGCGCAATGTATTAAAATCAAGTATTAGGAGATTTCATGGCCTCA
CTTACAGTAACTTTTATTTTGGAATTGAACTATTATTAAATTGTATCTAATTCTGGACTA
CAGTTTAATTATACTCAGTGCTTCTTAAGGCTTCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCATCATCCACCCATTTCAGCCTTTTATGCTGAGTGTTATAACAAGAAGATACAATTCAA
TGCTCACATCTGGACCAAATCAAAATTCCTTGGGATGTCCATCGGGGTGCACAACATAGG
GCAGGGCTGTGTCTCGTGTCTGGACTATGACGAGCATTACATTCTCACGTTCCCCAATGG
TTACGGCAGGTCCATCCTCACAGTGCCCTGGGTGGAACTAGGCGGAGAATGCAGTATTAA
TTGTTCCAAAACCGGCTACAACGCAAATATCGTCTTCCACACTAAGCCTTTCTATGGGGG
CAAGAAGCACAGAATTACTGCTGAGATTTTTTCTCCAAATGACAAGAAGTCTTTCTGCTC
AATTGAAGGGGAATGGAATGGTGTAATGTATGCAAAGTATTCAACGGGGGAAAATGCAGT
TTTTATAGATACCAAGAAGTTGCCTATAATCAAGAAGAAAGTGAGGAAATTGGAGGACCA
GAATGAGTATGAATCCCGCTGCCTTTGGAAGGATGTCACTTTCAACTTAAAAATCAGAGA
CATTGATGCAGCAACTGAAGCCAAGCATAGACTTGAAGAAAGACAAAGAGCGGAAGCCCG
AGAAAGGAAGGAAAAGGAAATTCAATGGGAGACAAGGTTATTTCACGAGGATGGAGAATG
CTGGGTGTATGATGAACCGTTACTGAAACGTCTGGGTGCTGCCAAGCATTAGGTTGGGAA
ACAGGGTTTGCTCCTGATAACCAGGGCAGGAGGCGTAAGCAAGCAACAATCTTCCTTTGG
GAGAAGCTGTTAACTCCCTTCTTATTGCAGTGGTTCCTATCTCAGGGATACTGGACTTTC
TGATGCAGATGAACAATTAAAGCGAGAAGAGCTTCCATTTTTCCTGTTCTGTGGCAGTCA
CAATTTGACTTCAGTCCTGAGAAAAACTTCAGGTTTTGAAAACAAGATGTCTGCTCCTTT
TCCAAATCCCACGCTTTGAAAAGCATTTATAAATCCCAGTTTCAAACTCTGCACTCTAGA
ATTGCTGTTGTGATAATACAACATGTTTCTTAGTTCAGGTATCTTGGGTTCTATATATAT
ATATATATATATATACACACACACACACACACACACACATATATATACATATATATAATC
TAGCTGATGCCAGATTTTTCATAAATACTCCATCTACTGTAAATATTGGTTCCTCTGAGT
TGTTTTAGAAAATGTAGCGCAATGTATTAAAATCAAGTATTAGGAGATTTCATGGCCTCA
CTTACAGTAACTTTTATTTTGGAATTGAACTATTATTAAATTGTATCTAATTCTGGACTA
CAGTTTAATTATACTCAGTGCTTCTTAAGGCTTCAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q9BRN2_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9BRN2_HUMAN

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-1095, gnl|bosTau2|chr21 (28561302-28562374)
               

               
               2-1095, gnl|Hg17|chr12 (65248139-65242722)
               

               
               2-1095, gnl|Mm7|chr4 (108443366-108438309)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1095, gnl|bosTau2|chr21 (28561302-28562374)
               

               
               2-1095, gnl|Hg17|chr12 (65248139-65242722)
               

               
               2-1095, gnl|Mm7|chr4 (108443366-108438309)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               tra (0.369276)
               

               
               sag (0.36543)
               

               
               sin (0.349895)
               

               
               bfe (0.299715)
               

               
               ova (0.258264)
               

               
               cbl (0.229595)
               

               
               aor (0.195274)
               

               
               mgm (0.180343)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.369276)
               

               
               sag (0.36543)
               

               
               sin (0.349895)
               

               
               bfe (0.299715)
               

               
               ova (0.258264)
               

               
               cbl (0.229595)
               

               
               aor (0.195274)
               

               
               mgm (0.180343)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	2-1095, gnl\|bosTau2\|chr21 (28561302-28562374)
	2-1095, gnl\|Hg17\|chr12 (65248139-65242722)
	2-1095, gnl\|Mm7\|chr4 (108443366-108438309)

	tra (0.369276)
	sag (0.36543)
	sin (0.349895)
	bfe (0.299715)
	ova (0.258264)
	cbl (0.229595)
	aor (0.195274)
	mgm (0.180343)
	isp (0.150376)
	lin (0.145603)
	spl (0.143184)
	lnt (0.142308)
	pla (0.133672)
	lyg (0.133103)
	kid (0.129735)
	sug (0.127291)
	bla (0.124347)
	nbm (0.0993246)
	ldo (0.0970026)