Non-Coding RNA Search

Ss1.1-rtra14_m15.5

Sequence:


               
               TTTTCACAACACACCTAAGACAAAAGAAATGCCTATTAATTCCATTCATTAAGCAGTTAA
GTCCAAACAACTTAATGAAAATTTATGTCCTAACCGCTAGTAATGGTAGCTGTTGCATAA
CTTCTCAAACGTTGAAATTTGCCTGAACACTGCTGGTATTCCTGTTCCACTGTTTTTTGC
AGTGTACTTACCACTGAAAATCTAGTTTTGCAAAGTTAAACTGCCATGGAAAGAACTAGA
GTGCTGTCAAATATTGAAATGTAAACTACCTCAAACTAGGATTTTATGTTGTGTCCAACA
GATGTGTTCTCCTCAAAAATTTAAAATATCCTATAGCACTCATGTTAATTTACTAGGGGG
ACCTAGTGCAGTTTTGGGAACCTTTTGACTGTACCAAAAGAAAACATAACATTCTTCTCC
TTTACATTAGAAAGAAATACATATGTGCTTTGTGTTTTAGCTTTATACCGACTTATACTA
TTTTATTATGCAATTTTTTAAAGCCTAAAATGAGGCATATCTTAATACTGTTATTTTGGA
AATCAGAAACATCTAATAAAGTCTGTACTTTATATCAGAAATAAAGTTTATACTTTGAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTCACAACACACCTAAGACAAAAGAAATGCCTATTAATTCCATTCATTAAGCAGTTAA
GTCCAAACAACTTAATGAAAATTTATGTCCTAACCGCTAGTAATGGTAGCTGTTGCATAA
CTTCTCAAACGTTGAAATTTGCCTGAACACTGCTGGTATTCCTGTTCCACTGTTTTTTGC
AGTGTACTTACCACTGAAAATCTAGTTTTGCAAAGTTAAACTGCCATGGAAAGAACTAGA
GTGCTGTCAAATATTGAAATGTAAACTACCTCAAACTAGGATTTTATGTTGTGTCCAACA
GATGTGTTCTCCTCAAAAATTTAAAATATCCTATAGCACTCATGTTAATTTACTAGGGGG
ACCTAGTGCAGTTTTGGGAACCTTTTGACTGTACCAAAAGAAAACATAACATTCTTCTCC
TTTACATTAGAAAGAAATACATATGTGCTTTGTGTTTTAGCTTTATACCGACTTATACTA
TTTTATTATGCAATTTTTTAAAGCCTAAAATGAGGCATATCTTAATACTGTTATTTTGGA
AATCAGAAACATCTAATAAAGTCTGTACTTTATATCAGAAATAAAGTTTATACTTTGAGA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               6-600, gnl|bosTau2|chr19 (35145637-35146226)
               

               
               6-600, gnl|Hg17|chr8 (95569768-95569179)
               

               
               6-600, gnl|Mm7|chr4 (11477200-11477751)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-600, gnl|bosTau2|chr19 (35145637-35146226)
               

               
               6-600, gnl|Hg17|chr8 (95569768-95569179)
               

               
               6-600, gnl|Mm7|chr4 (11477200-11477751)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               lin (0.291206)
               

               
               kid (0.129735)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.291206)
               

               
               kid (0.129735)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)

	6-600, gnl\|bosTau2\|chr19 (35145637-35146226)
	6-600, gnl\|Hg17\|chr8 (95569768-95569179)
	6-600, gnl\|Mm7\|chr4 (11477200-11477751)

	lin (0.291206)
	kid (0.129735)
	tra (0.123092)
	ebs (0.118301)
	cbl (0.114797)