Non-Coding RNA Search

Ss1.1-rtra15_m4.5

Sequence:


               
               TCATGGTCTCCCAGTGATTCTTTTTGATACATCAGCCTGCAAAGACAGTGCCCCATTTGA
ACTCTTTTTCATGATAACTGCCAGTATGCTACTGATTTTTATCTTTATTATACTGCTCAT
CCATTTCGAAGGCTGGCGGATATCTTTTTATTGGAATGTTTCAGTGCATCGAGTTCTTGG
TTTCAAAGAAATAGACAAGCAGCCAGAGCAGTTTGAATATGCAGCATATATAATTCATGC
CTATAAAGATAGGGATTGGGTCTGGGAACACTTTGCCCCAATGGAAGAAAAAGATGAAAC
TCTCAGATTTTGTCTGGAAGAAAGGGACTTTGAGGCAGGTGCCCTTGAACTTGAAGCAAT
TGTTAATAGCATCAAAAGGAGCAGAAAAATTATTTTTGTCATAACACAACATCTACTGAA
AGATCCATTGTGCAAAAGATTCAAGGTGCACCATGCAGTTCAGCAAGCTATTGAACAAAA
TCTGGATTCCATTATACTGATCTTTCTTGAGGAGATTCCAGATTATAAACTGAACCATGC
ACTCTGTTTGCGAAGAGGAATGTTTAAATCTCACTGCATCTTGAACTGGCCCGTGCAGAA
AGAACGGATAAATGCCTTTCATCACAAACTGCAAGTAGCACTTGGTTCCAGAAATTCAGT
ACATTAAGTTTATTTAGAGATTAAAGGAGTAATTTTCCTAATTTAAAAAAGTTCCATGGT
AAACTTGCATTTTACTTGACAATAATGTAAATCTACTTTTTCATATCTATAGGTAAGAGT
ATATTATATTACATCTCTTCTAGGGAAATTGATCTCCCTAATTAAGGCTTTTTATTACCA
ATTAACTTCATTTAACCCAAAATAAACATATAAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCATGGTCTCCCAGTGATTCTTTTTGATACATCAGCCTGCAAAGACAGTGCCCCATTTGA
ACTCTTTTTCATGATAACTGCCAGTATGCTACTGATTTTTATCTTTATTATACTGCTCAT
CCATTTCGAAGGCTGGCGGATATCTTTTTATTGGAATGTTTCAGTGCATCGAGTTCTTGG
TTTCAAAGAAATAGACAAGCAGCCAGAGCAGTTTGAATATGCAGCATATATAATTCATGC
CTATAAAGATAGGGATTGGGTCTGGGAACACTTTGCCCCAATGGAAGAAAAAGATGAAAC
TCTCAGATTTTGTCTGGAAGAAAGGGACTTTGAGGCAGGTGCCCTTGAACTTGAAGCAAT
TGTTAATAGCATCAAAAGGAGCAGAAAAATTATTTTTGTCATAACACAACATCTACTGAA
AGATCCATTGTGCAAAAGATTCAAGGTGCACCATGCAGTTCAGCAAGCTATTGAACAAAA
TCTGGATTCCATTATACTGATCTTTCTTGAGGAGATTCCAGATTATAAACTGAACCATGC
ACTCTGTTTGCGAAGAGGAATGTTTAAATCTCACTGCATCTTGAACTGGCCCGTGCAGAA
AGAACGGATAAATGCCTTTCATCACAAACTGCAAGTAGCACTTGGTTCCAGAAATTCAGT
ACATTAAGTTTATTTAGAGATTAAAGGAGTAATTTTCCTAATTTAAAAAAGTTCCATGGT
AAACTTGCATTTTACTTGACAATAATGTAAATCTACTTTTTCATATCTATAGGTAAGAGT
ATATTATATTACATCTCTTCTAGGGAAATTGATCTCCCTAATTAAGGCTTTTTATTACCA
ATTAACTTCATTTAACCCAAAATAAACATATAAGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|22135744|gb|AAM91032.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|22135744|gb|AAM91032.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               437-876, gnl|bosTau2|chr27 (5639940-5639497)
               

               
               437-876, gnl|Hg17|chr4 (187380946-187381404)
               

               
               437-876, gnl|Mm7|chr8 (44182698-44182257)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               437-876, gnl|bosTau2|chr27 (5639940-5639497)
               

               
               437-876, gnl|Hg17|chr4 (187380946-187381404)
               

               
               437-876, gnl|Mm7|chr8 (44182698-44182257)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               col (0.195008)
               

               
               mga (0.160205)
               

               
               tra (0.123092)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               mga (0.160205)
               

               
               tra (0.123092)

	437-876, gnl\|bosTau2\|chr27 (5639940-5639497)
	437-876, gnl\|Hg17\|chr4 (187380946-187381404)
	437-876, gnl\|Mm7\|chr8 (44182698-44182257)